BAC Information

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BAC

Clone NameMSMg01-192F14
Chromosome5 (Build37)
Map Location 55,521,896 - 55,522,299
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666377, LOC666380
Downstream geneEG666405
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192F14.T7 (MSMg01no192_f14.b1)MSMg01-192F14.TJ (MSMg01no192_f14.g1)
ACCAG382055AG382056
length1,2491,281
length of high quality
(start - end)
416 (29 - 444)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no192_f14.b1 PHD_FILE: MSMg01no192_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:34 2005CHROMAT_FILE: MSMg01no192_f14.g1 PHD_FILE: MSMg01no192_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTCATTCGGGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCA
TTTTATAGAAGTTCAATTTTAATATTGCATATATATTTAGCGTTTTGTTT
TTGAGAGTTACATACAAGCAAATAATGTATTTTAATCAAAACCATCCCAC
TTTACCAATACTCCACCTATACCCGACCACCAACATTTGTCACTCTCAAG
TTTATGAGTTCTGCTTATCAAACTCACTGAAACCACTAGGTCCTTTGCTT
ACACTGTGGCCACTTACAAGCTGGATTATGCACGCTCTTGTAAAAGATGA
AGAAAGTATACTTTTTGCAGTAGTTAAATTAAAGCTGAGAAAATATAAAT
CTTGGAGAAGGTACTAACAATAAGATGTGTTCTGGATGTTAATTATTTTT
CCACAGGAGTATTGTCACATGAGGAAAATAATGTTTCAATGTTTTTGTTT
TTTTCCCCCCCCCACAAGNAACTTCCCCCCCCACCAAAAGAAAAGGAGGG
TATGGNNTCTGTCNAGTTGACNAGTTGGAAATGTTTTGTTGAAAGATCTT
TTCTGTTCTGGAGTACTGGAACTTTAATTTTTTTAAATCCTATTTTAAAT
GATGGTTCTTAAACACTTTAACCTCCCTTGTAACCCACCACCCACCACAG
GTAGTAAAAAAAACTTGACGAAGCCAAGCACAACAATACATAACAAATGC
CACCTAATCGAAACGATATGGCGGAAGTGCACGTGTTTAAAAAGGTTCCC
TATGACAACAACCTCACCTGTGTTTTTTGTAGATCGGTCATTCAGCATAC
TCTGTAACAGCCCCCTTCTCAATGCCTTAAAAAACACTTCCTTGATCACC
CCAACTTTTCTCGTTTGCTTATATTTGGCTATGCCCATATTTTTTCTTCC
CATTTACTCCACTCCAACTAATTCTGTTCTTTCTTTCACTATCTCTCTCT
TTAATTCTTCTCATATTATATTATCTTCACCCCTTCTTACCCCCCNCCGG
CCCCGCCCGCCCGCCCCCACCCAACCCGACCAAACCCTCCTCCATTATAG
CCCCTATATATTTTTCTTCTTCTACATTATAATTCCTTACTCTCATTTTT
ATCTTTTCATTCTTCCTTTTCATTTCATTATCTCTTTCTTTCCATTACCT
TACTCTCTAACTTTCATTTATTCTCTACCTATCTTACTCTCTTATCTTCA
TTCTCTTTTCATCCACTCTTATCTATCTTCATCTACTTCTTTTCTTTTC
NNNTTTTCACTGGAGNCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCAGTAAACCTATCTGATCCTGGGCTGTT
TTGGTTGGGAGACTTTTAATGATTGCTAGTATTTCTTTAGGATTATGGGA
CTATTTAGATGGTTATTCTGATCCTGATTTAACTTTGGTATTTGGTATCT
GTCTAGAAAATTGTCCATTTCATCCAGATTTTCCAGTGTTGTTGAGTTTA
GACTTTTGTAGTGGGTTCTAATGATTTTTTGAATTTCTTCTGTTTCTTTT
GTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATTTGGATACTACCTCT
GGGCCCTTTTGTTAGTTTGCCTAGGGGTTTATCTATCTAGTTGATTCTCT
CAAATAACCAGCTTTTGGTTTTGTTGATTCTTTGTATTGTTCTCTTTTTT
TCTCCCCCCCCCATTTCCACCTTGACCTACACAAAAAAAGGGTCTCTAGG
AGTATGCCCTCTTGTGTATGTTTGCTTCTTTTTGTTCTAGAGCTCTCAGG
TGTGCTGTTAAGTTGCTTAGTGTAAGATCTCCAGTTTCTTTATCAGGTCA
GTTGGTCCTATGAATTTTCCTCTAAGTACCGCTTTTATTTTTGTCTCTTA
ATTTTGGGTTTGATGTGTCTCGACGTTCATTAAATTCTATGAACCCCTTT
TTTTCTTTCTTTATTTCTTCCCTGAGTTTCCCTTACATCTGTGGTCTTTT
TGGTTTTCCTTGTTTTTTTTTTCTTTTTCTTTTGTCTCTCTTTTTTTCCT
TTCTCTTTTCTTTCCTTCTCTTCTTTCTTCTTTTTTCGCATCTCTTTTCT
CTTTCTTTTTCTCATATTTCTCTTTCCTCTTCTTTCTTGCTTGTTCCTTC
TTCTCATCCCTATTTCTTCCTTTCATCCTCTTTCTTTTTTTTCATCTTTC
TTTTTCCCTTTTTTCCTTCCCCACTCTCTTCCTTCTCTCCTTTTTCTCTT
TTTCTTCTTTTCTTTCCTTTATCTTTTCTTCTCTTTCTATTTTTCCTTCT
TCTCTTCTTCTTTCTTCTTTTTTTTTCTTCCCTACCTATCTCCTCCTTCC
CTCTTCTGTCTATTCAATTCTTCTTTATTTCCTTTCATCTGTTTCCTTCT
TTCTTTTTCTTTCTTCTCATTTTCTTATTTTTTTNTGCACTCTCTTCTCT
TCTCTCTTCTCTTCTCTTTTTATCTTCTTTCTCCTATTCTTTTTCTCTAT
TTCANTTCCTTCATATCTCTTTCCTCTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_f14.b1 MSMg01no192_f14.b1 CHROMAT_FILE:
MSMg01no192_f14.b1 PHD_FILE: MSMg01no192_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:34 2005
         (416 letters)



>mm_chr5_55521681_55522499
          Length = 819

 Score =  685 bits (354), Expect = 0.0
 Identities = 391/404 (96%), Gaps = 3/404 (0%)
 Strand = Plus / Plus

                                                                       
Query: 16  gaattcattttatagaagttc-aattttaatattgcatatatatttagcgttttgttttt 74
           ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 216 gaattcattttatagaagttcaaattttaatattgcatatatatttagtgttttgttttt 275

                                                                       
Query: 75  gagagttacatacaagcaaataatgtattttaatcaaaaccatcccactttaccaatact 134
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 276 gagagttacatacaagcaaataatgtattttaatcaaaaccatcctactttaccaatact 335

                                                                       
Query: 135 ccacctatacccgaccaccaacatttgtcactctcaagtttatgagttctgcttatcaaa 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 336 ccacctatacccgaccaccaacatttgtcactctcaagtttatgagttctgtttatcaaa 395

                                                                       
Query: 195 ctcactgaaaccactaggtcctttgcttacactgtggccacttacaagctggattatgca 254
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctcactgaaaccactaggtcctctgcttacactgtggccacttacaagctggattatgca 455

                                                                       
Query: 255 cgctcttgtaaaagatgaagaaagtatactttttgcagtagttaaattaaagctgagaaa 314
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 456 cgctcttgtaaaagatgaagaaagtatactttctgcagtagttaaattaaagctgagaaa 515

                                                                       
Query: 315 atataaatcttggagaaggtactaacaataagatgtgttctggatgttaattatttttcc 374
           |||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||| ||
Sbjct: 516 atataaatcttggagaagttactaagaataagatgtgttctggatgttaattagtttacc 575

                                                       
Query: 375 acaggagtattgtcacatgaggaaaataat--gtttcaatgttt 416
           ||||||||||||||||||||||||||||||  ||||| ||||||
Sbjct: 576 acaggagtattgtcacatgaggaaaataataagtttcgatgttt 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 819
Length adjustment: 9
Effective length of query: 407
Effective length of database: 810
Effective search space:   329670
Effective search space used:   329670
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)