Query= MSMg01no192_g01.b1 MSMg01no192_g01.b1 CHROMAT_FILE:
MSMg01no192_g01.b1 PHD_FILE: MSMg01no192_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:39 2005
(422 letters)
>mm_chr5_101086356_101087175
Length = 820
Score = 714 bits (369), Expect = 0.0
Identities = 400/411 (97%), Gaps = 2/411 (0%)
Strand = Plus / Plus
Query: 11 ggaattcactctgtagactaggctggccttggactcacagaggtgtgttctgatccgctg 70
|||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||
Sbjct: 211 ggaattcactctgtagaccaggctggccttgaactcacagagatgtgttctgatccgctg 270
Query: 71 cctctgggatccacggcctatgccacacacccggcaatgctaactttctgctatgacaag 130
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 271 cctctgggatccaaggcctatgccacacacccggcaatgctaactttctgc--tgacaag 328
Query: 131 ctgaagctgagggaggaccaattcaaagcacacacacaatgcagttgtgttagttaagaa 190
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 329 ctgaagctgagggaggagcaattcaaagcacacaaacaatgcagttgtgttagttaagaa 388
Query: 191 gttccttgcctagtgaacaggggttgttttgttttaataatttccataatttacagtagg 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gttccttgcctagtgaacaggggttgttttgttttaataatttccataatttacagtagg 448
Query: 251 gaaaacggagggagaacaaggctaaggtcgaacctggtgagccaggtgggctcccaccgc 310
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaaaacggaggaagaacaaggctaaggtcgaacctggtgagccaggtgggctcccaccgc 508
Query: 311 agccacagcagcgtagtaggggacggtctgaccactgttggctcccgccaggctcagcgc 370
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 509 agccacagcagcgtagtaggggacagtctgaccattgttggctcccgccaggctcagcgc 568
Query: 371 tgccaccatggcgaccccaaagccactaagccactgccttgtgttctcctg 421
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgccaccatggcgaccccaaagccactaagccactgccttgtgttctcctg 619
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 820
Length adjustment: 9
Effective length of query: 413
Effective length of database: 811
Effective search space: 334943
Effective search space used: 334943
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no192_g01.g1 MSMg01no192_g01.g1 CHROMAT_FILE:
MSMg01no192_g01.g1 PHD_FILE: MSMg01no192_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:39 2005
(382 letters)
>mm_chr5_101200820_101201604
Length = 785
Score = 698 bits (361), Expect = 0.0
Identities = 377/385 (97%), Gaps = 7/385 (1%)
Strand = Plus / Minus
Query: 1 ctggtggggtttaatttaggactgaactatattcaggtgtatattcatgcatgcggcctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 ctggtggggtttaatttaggactgaactatattcaggtgtatattcatgcatgcggcctt 524
Query: 61 cactgaactcctcagcaaacaagaatagcaagccagtctttgttaattcttcc--tcaca 118
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 523 cactgaactcctcagcaaacaagaatagcaagccagtctttgttaattct--cagtcaca 466
Query: 119 gaaagtgttgggttttattgcattataataccacaggtgcaaacaccccaatattataat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gaaagtgttgggttttattgcattataataccacaggtgcaaacaccccaatattataat 406
Query: 179 atctttgtatatttcacatgcattcatgttatttgtactggaattattccaatgaacaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atctttgtatatttcacatgcattcatgttatttgtactggaattattccaatgaacaaa 346
Query: 239 gcccagatcttcacagtgtgttttcttacctgtgactcagtcatgcttgctttattgtcc 298
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 345 gcccagatcttcacagtgtgttttcttacctgtgactcagtcgtgcttgctttattgtcc 286
Query: 299 cttaacgctgaggaaactaaaactctactagtagttagatcta---cttaaattcaaact 355
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 285 cttaacgctgaggaaactaaaactctactagtagttagatctacttcttaaattcaaact 226
Query: 356 aatccgaactgggtttgggtactgg 380
|||||||||||||||||||||||||
Sbjct: 225 aatccgaactgggtttgggtactgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 785
Length adjustment: 9
Effective length of query: 373
Effective length of database: 776
Effective search space: 289448
Effective search space used: 289448
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
