Query= MSMg01no192_p08.b1 MSMg01no192_p08.b1 CHROMAT_FILE:
MSMg01no192_p08.b1 PHD_FILE: MSMg01no192_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:04 2005
(421 letters)
>mm_chr5_93256517_93257334
Length = 818
Score = 468 bits (242), Expect = e-136
Identities = 273/284 (96%), Gaps = 5/284 (1%)
Strand = Plus / Minus
Query: 18 gaattctcattgtccatagttggactatttatcacatgtatgtgttattggcaaagtgtt 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaattctcattgtccatagttggactatttatcacatgtatgtgttattggcaaagtgtt 438
Query: 78 gtgctctgcaggaggaggatgcagcactgaatgagaaccgggctcaggggaagggaaccg 137
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 437 gtgctctgcaggaggaggatgcagcactgaatgagaaccaggctcaggggaagggaaccg 378
Query: 138 agagccagaagcagggagagtgcactaactctgctctgtctgcctgaggagggaggtgtc 197
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 377 agagagagaagcagggagagtgcactaactctgctttgtctgcctgaggagggaggtgtc 318
Query: 198 ctggacccagagaggggggacgagcgtccacagccctggactgagagcggggggaccagt 257
|||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||
Sbjct: 317 ctggaccctgagagggg--atgagcgtccacagccctggactgagagcggggg-accagt 261
Query: 258 gtccacagccctggactgagagca-gggggacgagcatccacag 300
|||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 260 gtccacagccctggactgagag-atgggggacgagcatccacag 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 818
Length adjustment: 9
Effective length of query: 412
Effective length of database: 809
Effective search space: 333308
Effective search space used: 333308
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no192_p08.g1 MSMg01no192_p08.g1 CHROMAT_FILE:
MSMg01no192_p08.g1 PHD_FILE: MSMg01no192_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:04 2005
(381 letters)
>mm_chr5_93162418_93163198
Length = 781
Score = 609 bits (315), Expect = e-179
Identities = 333/339 (98%), Gaps = 2/339 (0%)
Strand = Plus / Plus
Query: 41 acacacacacacacacacttaaaatgtgataaaaacagtctttaaaaccatgcaacctaa 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 acacacacacacacacacttaaaatgtgataaaaacagtctttaaaaccatgcaacctaa 300
Query: 101 agctgggacttgcctagatgtaggttctctgttgacaattcaattatttatagtcacatt 160
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 301 agctgggacttgcctagatgtaggttctctgttgacaattcaattatttacagtcacatt 360
Query: 161 gagaggctcagcagccagtcttcttttctaagatgcacatatcactcaccagcctggtaa 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gagaggctcagcagccagtcttcttttctaagatgcacatatcactcaccagcctggtaa 420
Query: 221 ataattaatttgaggt-ttggggcatgatttggcctagacctattctcagactcttgatg 279
|||||||||||||||| ||||| ||||| |||||||||||||||||||||| ||||||||
Sbjct: 421 ataattaatttgaggtcttggg-catgagttggcctagacctattctcagattcttgatg 479
Query: 280 ggtagaaatcgcaaggtgtcagcatggggtctgacacagacaataattgctcggtagcca 339
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 480 ggtagaaatcgcaaggtgtcagcatggggtctgacacagacaataattgcacggtagcca 539
Query: 340 cttctccgaatggagaatggccttgagtgaggaaacaaa 378
|||||||||||||||||||||||||||||||||||||||
Sbjct: 540 cttctccgaatggagaatggccttgagtgaggaaacaaa 578
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
