BAC Information

Click to search

BAC

Clone NameMSMg01-192P24
Chromosome5 (Build37)
Map Location 39,167,666 - 39,168,124
singlet/doubletsinglet
Overlap geneClnk
Upstream geneMsx1, Stx18, Nsg1, LOC100040397, Zfp509, Lyar, Tmem128, Otop1, Drd5, 4930487D11Rik, Slc2a9, Wdr1, 4930421P07Rik, 6820424L24Rik
Downstream geneLOC384174, Hs3st1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192P24.T7 (MSMg01no192_p24.b1)MSMg01-192P24.TJ (MSMg01no192_p24.g1)
ACCAG382488AG382489
length1,2251,269
length of high quality
(start - end)
410 (45 - 454)172 (70 - 241)
definitionCHROMAT_FILE: MSMg01no192_p24.b1 PHD_FILE: MSMg01no192_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:10 2005CHROMAT_FILE: MSMg01no192_p24.g1 PHD_FILE: MSMg01no192_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGCGGCACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTTGTTGGGAGTCTACACTGTAAGACTGCAGTGCCTCCATGTTCCA
GATCCTCTAAATGTGCTCCCACTGGGGCAGAGTTTTAATACATAATTTGG
AGCATGGTCCTAAAGATGTACACCCATGGGCTCAGCAGTTAAGAGCCACA
ACCATCTGTAATGGGGTCTAGTGTCCTCTTCTGCTGTATCTGAAGAGAGC
AATGATGGTGTACTCATGTGCATAAAATAAGTAAGTCAATCTTAAAAAGA
AAAAGAAGTACACCTGTTTATGTCCCCTTGAGACTGGACGGACAGTCTAG
GTTCCCTGAGTTGGCCCTGGAGCCTTGCATCTTGCTCTCCTTTTCACCCT
ATCCAGCTCTTCTTGGGTAAATCTATTAGCTATTCTTTATTGCTGTGATA
CTTTCTGACAACCCACTGCTTGTGGGAGGAAAAGATTTAGTTCATCTTAC
AGATCGTAGTCTATGTGAAGGGAAGCCCGAGCAGCACCCCAGGGCAGGAC
TTGCAGCAGAGGAGTGCTGGCTAACTGGCTTGCACCAGGCTCATGGTCAG
CTACCTTTCTTAGACCTCCGAGACTACTGAATGAGGGGTGGCATCACCCG
CAGTGGGCTGGCCTCTCACACATCAATCATTCATTAAGCAAATGCACTAC
GGGGTTTGCCCAACAGGCCAGTCTGAGGGAGGCATTTTCTCTGCTGTGTT
TCCATCTTTCCTGATGACTCGAGTTTGTGTCAAGTTGANCAAAAATAAAA
ACAAATAAATAAATAAATCCTGAACAGTACAATTCTCTCTAAGTCCAGGT
CAGCTCCTTAGAGCTCTGCCTCAGACTGGCCCTGCATTCTCCACTTCCCG
GTTTGGCTTTTTGGAGCCCAATTTTTGCCAGAAACCCTACCAAGTCCTTC
TAATCAAAACCCCCCCTTTCCTGGGTCTTTCCCCCACAAAAATATATTTT
GGTGCCCCCACTTTTGATCCTTTTCCCTCGGGGGAATCCCTTTTCCCTTC
CTCTGGCGCTTGTAAATAAATCCATGTTTGGGGTCCTTTTTTTTTCCAAC
TTTCTCTTCTTTTCCANAATTTCTAATCTATTTTTCCTTTCTCCAATATC
TGCCTTCTTCTCATCTCTTTTTTTTCTTTTCATTCTCCCNCTCTATCTTT
TCTTTCTTTTTCATTTTTTTCTTTC
NNAACATCACGGAGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCATGACTGGAAAGCTGAGCTGACTAGGCTGA
GGTGTACCAGCTAAAAGAAATATAAAAACCAAGATAGAGAGATAAAGACA
GAAAGACCGATGGAAGGAAGGAAAGAAAGGAAGAGAGAGAAAGAAAGAGA
GAAAGGAAAGGAGGAAGAGAGGAAGGGAGGAAGGGAGGAAGGCAGCTCCC
CCCTCCCCCCCTTCTCTTCTCCCCCCCCCTCCCCCCCTCTCTTTCCCCTT
TCCCCCCCTCTCTCCCCCTCCCCCCCTCTCTCCCCCTCCCTCCCTCCTTC
CCCCCTCTTCCTCTCCCCCCCCCCTCCCCCTCCCCCCCTTCCCTCCCTTT
TTTTCCTCCCCCCTCCCCCCCTCCCCCCTCCCNNNNNNNNNNNNNTTTTT
TTTTTTTTTTCCCCCCCCCCCNNNNNNNCCCCCCCCCCCCCCAAAAAAAA
AGGGGGTTTTTNNTNTCCNNNNNNTTTTTTCCTCCTTCTCGCCCCCTCCC
TCCCCCCCCTTCCCCCCTCCCCCCTCCCTCCCTCCCCCCCCCCCTCCCTC
CCCCCCCCTCTCCCCCCTCCCCCCCCCTCCTCCCTCCCTCCCTCCCCCCC
CCCCCCCCCTCCCTCTCCCCCCCCCCCCTCCCCCCCCTTCTCCCTCCCCC
CCTCTCCTCCCCCCCCCCCCCCCCCCCCCCCCCTCTCTCCCCCCTCCCCC
CCCCCCCCCCCCTCCCCCTCCCCCTCCCCCCCCTCCTTCTCCCCCCCCCT
CCCCTCCCCCCCCTCCCCTCCCCTCCCTCCTCCTCCTCCCCTCCCCTCCC
CCCTCCCTCCCCCCCCCCTCCCCCCCCCCCCTCCCCTCCCCCCCCCCCCC
CCCTCCCCCTCCCCCCTCCCTCTCCCCCTCCCTCCCCCTCCCCCCCCCCC
CCCTCCTCTCCCTCCCCTCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCT
CCCCTCTCCCTCTCCCCTCCTCCTCCCCTCCTTCTCCTCCCCTCCCCCCC
CGCCTCCCTCCCCCTTCCCCCTCCCCCTCCCCCCCCCCCCCCTCCCCCCC
CCTCCCCCCCTCCCCCCCTCCCTCCCTTCCCCCTCTCCCTCCCTCTCCCC
CCCCCCCCCCCTCCCCCCTCCCCTCCCCCTCCCCTCTCCCTCCCTCTCCT
CCCTCTCCCCCCTCCTCCCCTCCCCTCCCCCCTCCCCCCGCCCTTCCCTC
CCTCCCCTCCCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_p24.b1 MSMg01no192_p24.b1 CHROMAT_FILE:
MSMg01no192_p24.b1 PHD_FILE: MSMg01no192_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:10 2005
         (410 letters)



>mm_chr5_39167517_39168327
          Length = 811

 Score =  582 bits (301), Expect = e-170
 Identities = 393/459 (85%), Gaps = 56/459 (12%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgttgggagtctacactgtaagactgcagtgcctccatgttccagatcctct 64
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 150 gaattccttgttgggagtctacactataagactgcagtgcctccatgttccagatccttt 209

                                                                       
Query: 65  aaatgtgctcccactggggcagagttttaatacataatttggagcatggtcctaaagatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 210 aaatgtgctcccactggggcagagttttaatacataatttggagcatggtcttaaagatg 269

                                                                       
Query: 125 tacacccatgggctcagcagttaagagc-------------------------------- 152
           | |||| |||||||||||||||||||||                                
Sbjct: 270 tccacctatgggctcagcagttaagagcaccgactgctcttccagaggtcctgagttcaa 329

                                                                       
Query: 153 -----------caca------------accatctgtaatggggtctagtgtcctcttctg 189
                      ||||            |||||||||||||||||||| ||||||||||||
Sbjct: 330 ttcccagcaaccacatggcagctcacgaccatctgtaatggggtctaatgtcctcttctg 389

                                                                       
Query: 190 ctgtatctgaagagagcaatgatggtgtactcatgtgcataaaataagtaagtcaatctt 249
            ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gtgtgtctgaagagagcaatgatggtgtactcatgtgcataaaataagtaagtcaatctt 449

                                                                       
Query: 250 aaaaagaaaaagaagtacacctgtttatg-tccccttgagactggacggacagtctaggt 308
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 450 aaaaagaaaaagaagtacacctgtttatggtccccttgagactggacggacagtctaggt 509

                                                                       
Query: 309 tccctgagttggccctggagccttgcatcttgctctccttttcaccctatccagctcttc 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tccctgagttggccctggagccttgcatcttgctctccttttcaccctatccagctcttc 569

                                                  
Query: 369 ttgggtaaatctattagctattctttattgctgtgatac 407
            ||||||||||||||||||||||||||||| ||||||||
Sbjct: 570 ctgggtaaatctattagctattctttattgttgtgatac 608


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 811
Length adjustment: 9
Effective length of query: 401
Effective length of database: 802
Effective search space:   321602
Effective search space used:   321602
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)