BAC Information

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BAC

Clone NameMSMg01-193F06
Chromosome5 (Build37)
Map Location 88,324,531 - 88,324,822
singlet/doubletsinglet
Overlap genenone
Upstream geneUgt2b34, Ugt2b1, LOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam
Downstream geneBC037156, Csn3, BC051076, 2310003L06Rik, 4931407G18Rik, Smr1, EG665603, Smr2, LOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1, Slc4a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193F06.T7 (MSMg01no193_f06.b1)MSMg01-193F06.TJ (MSMg01no193_f06.g1)
ACCAG382677AG382678
length765762
length of high quality
(start - end)
605 (46 - 650)292 (385 - 676)
definitionCHROMAT_FILE: MSMg01no193_f06.b1 PHD_FILE: MSMg01no193_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:41 2005CHROMAT_FILE: MSMg01no193_f06.g1 PHD_FILE: MSMg01no193_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:11:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAACCCCATTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGTTTTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGTGGTCTTTT
TGTTTTATTGACAGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGA
GGTCACATTTGTCAATTCTCGATCTTACAGTAAAAACCATTGCTGTTCTA
TTCAGGAATCTTTCCCCTGTGCCCATATCTTCAATGTTTTTCCACACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ACTTAGATTTGACCTTAGAACAAGGAGTTAGGAATGGATCAATTCACATT
CTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGCCAAAGATCAAGTGAC
CATAGGTGTATGGGTTCATTTCTGGGTCTTCAATTCTATTCCCTTGGTCT
ACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATCACAATTGCTCT
GTAGTATAGCTCTAGGTCAGGCATGTTGAATCTACCAGAGGTTCTTTTAT
CCTTGAGAAGAGTTTTTGCTACCCTATGCTTTTCGTTATTCCTGATGAAT
TTGCTGATCGCCCTT
TCAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCAGTGCTTAACTGAGCTCTTAACATC
AGACATGACAGACACTGCAAGTAAACTAAACCCCAGCTGCTCAACAGCTA
AAAGAATTGTGTTCCCAAACTTCCAACCAACTGCTCAGAAAATTATTCTT
AAATCTATGGTGTAATTTAAATCAAGTACTGAAAATTCACCCAAGAATAT
TAGTATATTCTAGTATTAGAACTAGTATCACCAAGTGCCCAATTTTTAAA
GAAAATATAATGAGGGATGACCAAAGACTGGAGAGGAAGGAGACATGTAA
TGTAGTTTCTCTATTCTTTACAAGTCACAACAATAGTTAGAAAAACGATG
AGATGGGCTTAGTGATGTTAGAGATATAATAATAAATAGTTTTTAGTCTT
ATTTATTTATTTATTATCTTTAGAATGTACAAGCATTTAGAAAATGTAAT
CTGAATGTTCTGTTGACCATTGTTTTTGAAGCTGCCAGCATCTGAATGAA
TGAATGTCCTGATATTTTCTGGTCAATCTAACCCATGCTTTCATTGTCAG
CTCAACACACATTAATTCTCTGTATTAGTAAGATCACATATACTTCTCAT
GTCTGGCTTCCCTTACTAAACAAAGTTTCTTGTGACTTATTTTCCTAATG
ACTTGTTTCATATATATATATATATTCATTCTTCGTTCATATGCTTCTTT
CTTCATTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_f06.g1 MSMg01no193_f06.g1 CHROMAT_FILE:
MSMg01no193_f06.g1 PHD_FILE: MSMg01no193_f06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:11:41 2005
         (292 letters)



>mm_chr5_88324331_88325022
          Length = 692

 Score =  451 bits (233), Expect = e-131
 Identities = 278/293 (94%), Gaps = 2/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttagaaaaacgatgagatgggcttagtgatgttagagatataataataaatagttttt 60
           |||||||||||| |||||||||| |||||||| ||| || ||||||||||||||||||||
Sbjct: 201 agttagaaaaactatgagatgggtttagtgatattaaaggtataataataaatagttttt 260

                                                                       
Query: 61  agtcttatttatttatttattatctttagaatgtacaa-gcatttagaaaatgtaatctg 119
           ||||||||||||||||| ||||||||||||||| | || |||||||||||||||||||||
Sbjct: 261 agtcttatttatttattcattatctttagaatg-agaaagcatttagaaaatgtaatctg 319

                                                                       
Query: 120 aatgttctgttgaccattgtttttgaagctgccagcatctgaatgaatgaatgtcctgat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 aatgttctgttgaccattgtttttgaagctgccagcatctgaatgaatgaatgccctgat 379

                                                                       
Query: 180 attttctggtcaatctaacccatgctttcattgtcagctcaacacacattaattctctgt 239
           ||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||
Sbjct: 380 attttctggtcaatctaacccctgctttcattgtcagcacagcacacattaattctctgt 439

                                                                
Query: 240 attagtaagatcacatatacttctcatgtctggcttcccttactaaacaaagt 292
           ||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct: 440 attagtaagatcacatatacttctcatgtctggcttccctttctaaacgaagt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)