BAC Information

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BAC

Clone NameMSMg01-193L11
Chromosome5 (Build37)
Map Location 46,570,112 - 46,570,424
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040737, Qdpr, EG624224, Lap3, LOC100040762, Med28, 9630031F12Rik, 9630001P10Rik, 1600023N17Rik, Lcorl, LOC100041576
Downstream geneEG666103
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193L11.T7 (MSMg01no193_l11.b1)MSMg01-193L11.TJ (MSMg01no193_l11.g1)
ACCAG382903AG382904
length722728
length of high quality
(start - end)		319 (46 - 364)642 (77 - 718)
definitionCHROMAT_FILE: MSMg01no193_l11.b1 PHD_FILE: MSMg01no193_l11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:18 2005CHROMAT_FILE: MSMg01no193_l11.g1 PHD_FILE: MSMg01no193_l11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATAATTCAAAAAGAGAAACAGATACAGGAGAGAAACAGGTCTAT
GATGCTTTAGTTGACTGACTACACTTTGCAGAGTACATTGTATGGAACTG
CATCATGGTGGCTGAACATGGTCTCTTATTCTGTAACTGGATTATTGGAT
AAGGGCCGTCATCATTTCTTTTTGTTTTTGTTTTTTGATTCTCAAATTTC
TTTTATGTGTAGTGGTAATCATTCTCTCATCCTTATTTATATTGAGGGTT
CCCCTTTGTAATACTTACAAAGGTTCAATGGGTTGGCTATGTAATCAAAG
GTCTTTTGTTCTTGTTAGTACCATCCATGGGACTTGGTGATGGGAAGTCA
TTCTACTGCACAGAACATTGTGAGAGTTGATTATTCACTACTTCTAGCTA
TCCATGATTCTTTCAGCTGGAATATTCTTCTCCGTGGTACAGATCAAGTT
TATCTTTTCTCTCTTTCAAATTGTCTTTACACTGTTATTTATATCCTAGA
GACTATAATACATAATAATTACTATGCCTTCAGGTTATAGCTTCATGCAA
AATACAATGTGATTATTGTTCCTGTGTGCTTTTTCCTTAATGCTTAATGT
TATATTTTTACTGCGCACCCATACTCACCTAATTGCTTTGCAGCTATTGA
ACAATTATATAATGTTCTGTTA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGGTAACAGGCAACATAAGC
TTCTAGTGGAAGATGCTAGGAGGGGTCAGTAGGGTACCATTCTTGTTTGA
TTTCTGTTGCTCTAATAAAAACACCTTGACCCAAAGCAAATTTGGAGGAA
ATGGTTTATTTGGCTTACAACTCCAGGTCACAGTATATATGGAAGAAAGT
CAAGGCAGGAGCTCAAGGCAGGAACATGAAGGCAGACACTTCTATTCCTC
AAGCATTACCCCTGACCACAGAAATGTTGGCAGTTTTATAGAAGGATATT
TTTTTAAGAAAAAAAAAACTTGTATAAACAAGTAACACAAATACAAAACA
GAACAAGTAGTAAGTCCATATCTAGATGTATTCTAGGACAAATATCAATA
TTAGAAGGGGTACAAAAAGAAAAAACACACAAAAGTATGATTAGTTATCA
GTCAATCAACCCATGCCTGTATATACTCATATCAAAACAAAATTCGTGAA
CAAGACAAACACCTAGAAAGATTTCTCTTTAAAACTGTATTCAGAACTGA
ATATGAAATAATATCTTTAGGAAGGCGAGCCATAGCTCAAATTGTAAGAA
ACTTCCTCCCAAACACAAGAATCGTAGTTCAATCCCAAGAATTTCACAGT
ACAAAATAAATCCTGGATACAGTGGCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_l11.b1 MSMg01no193_l11.b1 CHROMAT_FILE:
MSMg01no193_l11.b1 PHD_FILE: MSMg01no193_l11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:18 2005
         (319 letters)



>mm_chr5_46569909_46570627
          Length = 719

 Score =  584 bits (302), Expect = e-171
 Identities = 311/314 (99%), Gaps = 2/314 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccataattcaaaaagagaaacagatacaggagagaaacaggtctatgatgcttt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccataattcaaaaagagaaacagatacaggagagaaacaggtctatgatgcttt 263

                                                                       
Query: 64  agttgactgactacactttgcag-agtacattgtatggaactgcatcatggtggctgaac 122
           |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 264 agttgactgactacactttg-aggagtacattgtatggaactgcatcatggtggctgaac 322

                                                                       
Query: 123 atggtctcttattctgtaactggattattggataagggccgtcatcatttctttttgttt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 atggtctcttattctgtaactggattattggataagggccgtcatcatttctttttgttt 382

                                                                       
Query: 183 ttgttttttgattctcaaatttcttttatgtgtagtggtaatcattctctcatccttatt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgttttttgattctcaaatttcttttatgtgtagtggtaatcattctctcatccttatt 442

                                                                       
Query: 243 tatattgagggttcccctttgtaatacttacaaaggttcaatgggttggctatgtaatca 302
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 443 tatattgagggttcccctttgtaatacttacaaaggttcaataggttggctatgtaatca 502

                         
Query: 303 aaggtcttttgttc 316
           ||||||||||||||
Sbjct: 503 aaggtcttttgttc 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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