BAC Information

Click to search

BAC

Clone NameMSMg01-193L15
Chromosome5 (Build37)
Map Location 69,396,124 - 69,396,417
singlet/doubletsinglet
Overlap genenone
Upstream geneAY616753
Downstream geneLOC666996, Kctd8, LOC545756, Yipf7, Guf1, Gnpda2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-193L15.T7 (MSMg01no193_l15.b1)MSMg01-193L15.TJ (MSMg01no193_l15.g1)
ACCAG382911AG382912
length741852
length of high quality
(start - end)
294 (70 - 363)30 (76 - 105)
definitionCHROMAT_FILE: MSMg01no193_l15.b1 PHD_FILE: MSMg01no193_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:19 2005CHROMAT_FILE: MSMg01no193_l15.g1 PHD_FILE: MSMg01no193_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:12:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTGTCATACCCAGAAGCTCTTAATAGTTTTTTTTCCTTACTGATT
TTTACTTTAGTTTCTTTCTATATCACTTAAAAGTACAACTTCTATCACCA
TTTTGCTGTTCCAAAGTCTAATTTAGAAAAAAAAAATCATGCATTGGGCA
AAGCTAAGCAGATCTCCTTAAACTCAATTTCTTTCGCTTCATTTGTTTTT
CTTGTTCTCATTTCACGTTTAAAGGCTATGCCATCAAGGTCTAGGACAGT
TAGATTTCATAGTAGAATTTCCTTGGTTATGCACATGGCAGGGCGTTAAG
ATTCTGGGCTATTATCTGTTCGCGACGCCACTGAGGCTTAATTCTTCCTC
TTCCTTGTTTGATGAAAATACTTTTCATAAGAAGCAGTTTTACGTTTAAA
AATAGTTTAACCATCGGGGTGAAAGGGTGTGAGATCACCTATGAAGGCCA
AACAGAAACAAACGGCTGTGAGAAATTTACTTTCTTTCATTTGTTGTATT
ACTGTGGCCCAGTGACCTCATTTATTAAGTAGTTGCTATGAATTAAATTA
CCTCCAGGAACTTCCCTTATATTTATATTCTACCTGCTTTCACTTGATGT
TTAGGAAGACAGCCTTTATTCACCTCTGGTTTATACATCATCCAAGACAT
TTCACATAGAATACTATATCAATGCCCCCTTGTAATAAGGT
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTACTGCTACAGTCAATAAATAGATA
GATACATAGATAGATAGATAGATACCCTCATAGATAGATAGATAGATACA
TAGATCGATCCCCCCCTCCCCCCCCCCCCCTCCCCCCCCCCCCCCCTTTC
CCCCCCCCCTNTCCCCCCCCCCCCCCCTCCCCCTTCCCCTCTCCCTTCCC
TCCCCCCCCCCCCCCCCTTCCCCCCCCTTTTCCCCCCCCCCCCCCCTCCC
CCCCTCCCCCCCCTCCCTCCCCCCCCTCCCTCCCCCTNCTCCTTTCCCCT
TCCCCCTCCCCCTTCCCTTTTTTCCCCCCCCCCCCCCCCCCCCCCCCCTC
CTCCCCCCTCCNTTTTTTTCTTCTCTCCCCCCCCCCCCCCTCTACCACAA
TCCCCCCTTTCCTCCCCCCCCCCCCCTCCTTCTCCTCCCCCCCCCCCCCC
CCCTCCCCCCTCCCCCCCCTCCTCTCCCCCCCCCCCCCCCCCCCCTCTCC
CTCCTCTCCCCCTCCCCCCTCCCCTCCTCCCCCTCCCCCTTTTTTCCCCC
CTCCCCCCCTCCCCCCCCCCCCCCTTCTTCCCTCCTTCCCCCCCCCCCGC
CCCTCCTTTTTCCCCCCCCCCCCCTCTCTCCCCCCCTTCCCTCCCCTCCC
CCCCCCTTCCCCCCTCCTCCCCCCCCCCCCTTCTCCCCCCTCCCTTATCT
CCCCCCTTTTCCCCTCCCTCCCCTCTTCCCTCCTCCTTTCCTTTTCCTCT
CCTCCGTCTCCCCCCCTCCTCCCCCCCCCTCCTCCCCCCCCTCCTCCTCC
CG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no193_l15.b1 MSMg01no193_l15.b1 CHROMAT_FILE:
MSMg01no193_l15.b1 PHD_FILE: MSMg01no193_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:12:19 2005
         (294 letters)



>mm_chr5_69395924_69396617
          Length = 694

 Score =  538 bits (278), Expect = e-157
 Identities = 290/294 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctcttaatagttttttttccttactgatttttactttagtttctttctatatcactta 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 494 agctcttaatagttttttttccttactgatttttactttagtttctttctatattactta 435

                                                                       
Query: 61  aaagtacaacttctatcaccattttgctgttccaaagtctaatttagaaaaaaaaaatca 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaattacaacttctatcaccattttgctgttccaaagtctaatttagaaaaaaaaaatca 375

                                                                       
Query: 121 tgcattgggcaaagctaagcagatctccttaaactcaatttctttcgcttcatttgtttt 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 374 tgcattgggcaaagctaagcagatctccttaaactcaatttctttcacttcatttgtttt 315

                                                                       
Query: 181 tcttgttctcatttcacgtttaaaggctatgccatcaaggtctaggacagttagatttca 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 314 tcttgttctcatttcacgtttaaaggctatgccatcatggtctaggacagttagatttca 255

                                                                 
Query: 241 tagtagaatttccttggttatgcacatggcagggcgttaagattctgggctatt 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tagtagaatttccttggttatgcacatggcagggcgttaagattctgggctatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)