Query= MSMg01no194_f01.b1 MSMg01no194_f01.b1 CHROMAT_FILE:
MSMg01no194_f01.b1 PHD_FILE: MSMg01no194_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:09 2005
(667 letters)
>mm_chr5_36940733_36941799
Length = 1067
Score = 1176 bits (608), Expect = 0.0
Identities = 645/664 (97%), Gaps = 11/664 (1%)
Strand = Plus / Plus
Query: 4 ggaattctttccagctcggaattctgttgcgaggcatagccctgtgcttgagactcttcg 63
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttccagcttggaattctgttgcgaggcatagccctgtgcttgagactcttcg 263
Query: 64 cagcctccgagcttgctggaggcactggtgggtgtgaggtggatctgctttgtgcactgg 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagcctccgagcttgctggaggcactggtgggtgtgaggtggatctgctttgtgcactgg 323
Query: 124 ttatagtagggcactggtgggaacagggggtgtaggacaggaacacgacctctcctaaga 183
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 324 ttatagtagggcactggtgggaacagggggtgtagggcaggaacacgacttctcctaaga 383
Query: 184 tgtataggaagggctaggaatgcttcagagcctgttaggctcagccaaggtgaggtgaaa 243
||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 384 tgtataggaagggctaggaatgcttcagagc-----------agccaaggtgaggtgaaa 432
Query: 244 cttttgctgcaaggcagggagggaggaacagctagtagggctgagggtctttccaccatg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cttttgctgcaaggcagggagggaggaacagctagtagggctgagggtctttccaccatg 492
Query: 304 ccacgccaggtggcaacaaaggggacgaatggacagtgcacccctatgatatgggctcct 363
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 493 ccacaccaggtggcaacaaaggggacgaatggacagtgcacccctatgatatggcctcct 552
Query: 364 ggtctttggcgtctcctgaggaccaatatccttggcagctttggtgcttatcaactaacc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggtctttggcgtctcctgaggaccaatatccttggcagctttggtgcttatcaactaacc 612
Query: 424 ttcaagataccgtagatggggacaccatctccatctgtgacagggcctgtagggatataa 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ttcaagataccgtagatggggacaccatctccatctgtgacagggcctgtagggatataa 672
Query: 484 ggccttcccaccccttggtctccaagtgatacctgaactatggtccaggtaccaggctgt 543
||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 673 ggccttcccaccctttggtctccaagtgatacctgaaatatggttcaggtaccaggctgt 732
Query: 544 gccatttattctccagggtggcgtggtgctctgagctccttggccaggctctccttgcat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gccatttattctccagggtggcgtggtgctctgagctccttggccaggctctccttgcat 792
Query: 604 acctggctcctgttgtccttgacccctgccttggagcacagccactactactcgaaagtc 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 acctggctcctgttgtccttgacccctgccttggagcacagccactactactcgaaagtc 852
Query: 664 aggg 667
||||
Sbjct: 853 aggg 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1067
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1057
Effective search space: 694449
Effective search space used: 694449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_f01.g1 MSMg01no194_f01.g1 CHROMAT_FILE:
MSMg01no194_f01.g1 PHD_FILE: MSMg01no194_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:09 2005
(288 letters)
>mm_chr5_37133660_37134347
Length = 688
Score = 543 bits (281), Expect = e-159
Identities = 284/285 (99%)
Strand = Plus / Minus
Query: 1 accttttctgagaccttaaatgtgctaagaggctgtagagaactttttccaaagtggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 accttttctgagaccttaaatgtgctaagaggctgtagagaactttttccaaagtggctt 426
Query: 61 aaaccatcagtcccatcaataaatgtgagaccatttattttaggcccttcaccgaccaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaaccatcagtcccatcaataaatgtgagaccatttattttaggcccttcaccgaccaaa 366
Query: 121 gggagaggggattcttcccgtgtagtgaagcccagcttggggttagggagtggggacaag 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gggagaggggatccttcccgtgtagtgaagcccagcttggggttagggagtggggacaag 306
Query: 181 atgaaaagatggctatggaaataaggcatctctggaccatttggcttgcaggacagcgtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 atgaaaagatggctatggaaataaggcatctctggaccatttggcttgcaggacagcgtc 246
Query: 241 ttctcaccagggggcgctataggggtagggaaagcatgaaaactg 285
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ttctcaccagggggcgctataggggtagggaaagcatgaaaactg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
