BAC Information

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BAC

Clone NameMSMg01-194F10
Chromosome5 (Build37)
Map Location 134,173,434 - 134,173,596
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039731
Downstream geneLOC666038, LOC100039750, Gats, Wbscr16, Gtf2ird2, Ncf1, Gtf2i, LOC630424, Gtf2ird1, LOC100039820, Clip2, EG666071, Gm52, Rfc2, Lat2, Eif4h, LOC638081, Limk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194F10.T7 (MSMg01no194_f10.b1)MSMg01-194F10.TJ (MSMg01no194_f10.g1)
ACCAG383302AG383303
length730786
length of high quality
(start - end)
315 (36 - 350)167 (77 - 243)
definitionCHROMAT_FILE: MSMg01no194_f10.b1 PHD_FILE: MSMg01no194_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:10 2005CHROMAT_FILE: MSMg01no194_f10.g1 PHD_FILE: MSMg01no194_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTGGC
TTCTCCAGCACTATGTCTGCCTGCACACTGCCTTGCTTCCCACTATGATG
ATAATGGTCTGACCCTCTGAAACTGTAAGCCAGCCCCAATTGAATGGTTT
CCTTTATAAGAGTTGCCTTGGTCATGTTGTCCCTTCACATCACTAAAACC
CAAACTAAAACACTTCTAGAGTTTAAGTCTGTGCTCCAAAATACACATCT
TCAAAACAACCTTTACCTTTACATATTGATGGCAATTGGAAACGAGGCAT
TTAGAAGGTGATTAGGATTAGATGAGCTTATTAGATGGTCTCATGATATA
TTTTGATGATCGCCACTACTCATTTTTCTAAGAAGAACAGAACACTGAGC
AAGCAACACACTTCCTGTCTTGCCATATCGTGCCACAGGACGACACACCC
TAGACGCCAATCCCACACATATTTTTTTAATTACCCCTTCTGTAGTTGTC
AATGAAAGCATAAGAAAATCAGCCAAGATATTGCTTTACAGTTCAATTGT
AAATGTGAAGATAGCTGTTGCCTATACCATTAGTGAAGATACTTTTGCGT
GGTTCTGAAATTCATTGTCTGAATCCTTTGATACATATGTCAAATTTCTT
TATATTTTCCAAAACTCGTACACACATTATAACACTTCTACCATTTTATC
TACAATATCTAGAACATTCTACAATTACTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGTGCTAAAAACAAACCAATGA
ATTCCCAAAGAGACTAGCTCATTAAACATGTGCAGAGCCTTTTGTTCTAG
CTTGGGAGTTCAGTTCATCCATATTTTTTTTGAAGATTAAAAAGTCTTAA
TTACAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNGNNNNNNNNT
TTCCCTTTCTCCCCTTTTTCTCTCCCTTCTTTCTTTTTCTTTTTTTTTCT
TATTTTATTTCCATCCTTTTTTTTTTTTTTCTTACCTCCCCTTCAACCAC
AAAAAAATTTTTTANGTGATTCCCAAAAACGAAACCCCNATTTATATTGT
TTAGTTATTTGAATATTGGTGGCCCCCCCCAAAAAAAAAAAAAAAATTGC
GGGGGGGGGGGGGGGTTTATTACTTTCCTTCTTTCTCTTATTTCTCGCTC
TCAACATTTTAATGTTTCATCTTCTTTCCCTGCATGTTATATTCGTTTTA
CTCAGTGCCTTTCAGTTCTGCCTGCATTTGTCCCTTTCAAATTTAACCTA
TGTATACGCGATTGTCATTTTTTCCTACTTTTATTCTCTCCGTAACCATT
TATTATTCATTTCTTGACATCTTTTTTTCCTCCCCCGTTCCATTATACCA
TTACTTCCTCACGTATATCCCCCTTTTGCGCGCCGACTTTTCCTTATTTT
GTCCGCATCCTTCCTTTTACCCACCTTTCATCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_f10.g1 MSMg01no194_f10.g1 CHROMAT_FILE:
MSMg01no194_f10.g1 PHD_FILE: MSMg01no194_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:11 2005
         (167 letters)



>mm_chr5_134173267_134173833
          Length = 567

 Score =  263 bits (136), Expect = 4e-75
 Identities = 157/164 (95%), Gaps = 2/164 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtgctaaaaacaaaccaatgaa-ttcccaaagagactagctcattaaacatgtgcag 59
           ||||||||||||||| |||| |||| || |||||||||||| ||||||||||| ||||||
Sbjct: 330 tcagtgctaaaaacacaccagtgaactt-ccaaagagactaactcattaaacacgtgcag 272

                                                                       
Query: 60  agccttttgttctagcttgggagttcagttcatccatattttttttgaagattaaaaagt 119
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 271 agccttttgttctagcttgggagttcagttcatctatattttttttgaagattaaaaagt 212

                                                       
Query: 120 cttaattacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 163
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 cttaattacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)