BAC Information

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BAC

Clone NameMSMg01-194L22
Chromosome5 (Build37)
Map Location 22,366,379 - 22,366,667
singlet/doubletsinglet
Overlap geneLhfpl3
Upstream geneSlc26a5, Reln, Dnaja1-ps, LOC100041982, Orc5l, LOC100042049, LOC668232, LOC100042067, LOC671222, LOC625174
Downstream geneEG625219, LOC100042101, LOC100042082, 4930580E04Rik, BC050254, Srpk2, Pus7, Rint1, 4933427G23Rik, Tomm7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194L22.T7 (MSMg01no194_l22.b1)MSMg01-194L22.TJ (MSMg01no194_l22.g1)
ACCAG383549AG383550
length730722
length of high quality
(start - end)
322 (385 - 706)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no194_l22.b1 PHD_FILE: MSMg01no194_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:43 2005CHROMAT_FILE: MSMg01no194_l22.g1 PHD_FILE: MSMg01no194_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCTTATATACTCTCTCCCCAGAGGAATCAGTTTTGGTTTTCT
AGAGTATCCCCAGTGAAAATGTAACCCTGAGGACTGTCGAGTGAGAGACA
TATTAGAATGCAATCATTCCTTACAGTTCTTCAGTTGGCTGAGTTGTCTC
TAATAACAAAGCCAGTTCATTCATGTACCTCTGTATGTGCGATCCTAAGT
CTCCTTATGCGTGTACTAAGCAATAAGGAAAACACAAACTAATGGAATTC
AGGAAATAAAAATTTTAGGAATGTAAACAGAAACTACAGAGGCAAGCTGC
ACCAATAGAATACAAAATATGGAAGAAAGACTCTCAGGCATTGAAGATAT
GATAGAAAAAAATCAATACATTGGTCAAAGGAAATATTAAATCTAAGAAA
TCCCCTAAAACAAAACATTCAGGAAATATTGGACACTGTGAAAAGACCAA
ATCTAAGAATAATCGAAGAATAGAGAAGAAACCAAGTTCAAAGGACCAGA
GAATATTTTCAACAAAGTCATAGAAAAAAATTTCCTAACCTAAAGAAGGG
CATGGCTATCGAGGTATAAGAAGCTTACAGAGCACCAAATGGATTGGTCC
AGAAAAGAAAATACTCTCACCACATAATAACAAAATGCTAAACATACAGA
GCANAGAAGATATTAANAGCTGCAAGAGAA
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATAGAATCTTCTCTAGTGAAGAG
GGCGTGCTTGTTTGTTCTTATAGTGATGGGTGAGGCAGAGATCTCTAATT
AAGCAGTACATTAGGATGTAGATGGAGTCACCACCCTCTGCCATACTGTG
CTGCTGGGCCTTAATGGAAACTGTCACACCCTGGAGACATGGTGTGTATA
GATGAGTGTATAATCTAAGTATGTTTAATGAATCTCAGTAGGACATGGAG
AAGTGGGAAATTAAAGTCCTCCTGCTTCTTATATGTGAATTGACAGTGCC
TCCTAAATCATTTTGTTTTTTTTACCTCCGCTCCCCCTATTTAAATATCT
AAAGTACCTATTACCTCCTGTGTTGCTAATGAAAAAGAAGTTTACTCGAG
CAGAAGCCTGGGCTGGAGAATCACTTCTCCCTGAGGCTTTCCCATCATCC
TTTGAGGAGGGGTTGGGGATGATTGCTCCAAANTCTACTTCCTTTCTCTA
GAGTCATCTGCTACCCTCTTGATAACTTACTACTTGCTCGTTTCACTCCT
CTTATTTTTCTTAATATTATATCTCCCTAATTTCCGCGCTTCTTTTAATT
TTTTTCCTAGCTTTTCCCCTTTTATCACCATTTTCCATTATTTTCTCTAT
TTTTTTCTCTCCTTCTTACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_l22.g1 MSMg01no194_l22.g1 CHROMAT_FILE:
MSMg01no194_l22.g1 PHD_FILE: MSMg01no194_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:43 2005
         (292 letters)



>mm_chr5_22366179_22366870
          Length = 692

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagaatcttctctagtgaagagggcgtgcttgtttgttcttatagtgatgggtgaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagaatcttctctagtgaagagggcgtgcttgtttgttcttatagtgatgggtgaggc 260

                                                                       
Query: 61  agagatctctaattaagcagtacattaggatgtagatggagtcaccaccctctgccatac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagatctctaattaagcagtacattaggatgtagatggagtcaccaccctctgccatac 320

                                                                       
Query: 121 tgtgctgctgggccttaatggaaactgtcacaccctggagacatggtgtgtatagatgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgctgctgggccttaatggaaactgtcacaccctggagacatggtgtgtatagatgag 380

                                                                       
Query: 181 tgtataatctaagtatgtttaatgaatctcagtaggacatggagaagtgggaaattaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtataatctaagtatgtttaatgaatctcagtaggacatggagaagtgggaaattaaag 440

                                                            
Query: 241 tcctcctgcttcttatatgtgaattgacagtgcctcctaaatcattttg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctcctgcttcttatatgtgaattgacagtgcctcctaaatcattttg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)