TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACACGGTCCCGTGCTCTTACCCACTGAGCCATCTCACCACGGAAG
AGACAGTATGGGCACAGGTTAGGTGTGGACACATACATACATAGCCACTA
TTTCAAACAGCCACTCTTTTCTTACCCTGTTACTGCGAGGTAGTTTCCTG
ATGATTTTTGCCAGGCAAATTGTATCGGAGCACCAAGCCAAGACTTTTCT
AGCAGGGAGAAAACACGCTAAAAAAATAAACAAATAAACACAAGTTTTAC
ATTTTAAAAAGATGATGTGTTGGTCAGAAAAATATGTCAAAGTTTAATCA
TGCAGATATGCAGAAAGCAGAATGATCGATGATGTTTATTCAAAAATAAA
TAAATAAATAGCTAAATAACAGTGTGGGCCAGGCATGGTGGCTTACACCT
TTAATCCCTGCACTTGACAGATAGAGGGATCTCTGTGACATTCAGGGCAG
CCTGGTTCACACAGTGAGTTACAGGCCAGCCAGGGACACAGAGTAAGACC
CTGTTTCCAAACAAACAAACAAACAAACAAATTAATGATAACTGAACAAA
ACAAAATCAACATCAGTCAAAGGTAAGTAGTTGGTGCAGCAGAACGGACT
TTGTGATAGTTAGCTTTAATTGACGATACAACCTGGGAGCATCTGGGAAG
AGAGGCTCAACAAGGGACTTTCTACG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGCCCATGTTAGGTGCTCTGATA
AGAGTAGGGACTGGTGAAGGCTTCTTTGTTCTTCCTTCTGCTTTTTTTCC
TCTTAAAACTGTGAGTGTGTGAGTGTGTGTGTGTGTGTGTGTATGTGTGA
GAGAATGAAATAATATCCCACTTCACAGGAACAAGTCTGTAGGTTACTTT
TGAACTTTTATTGTAAATCAGTGTATGACATAAGAAACAACTTCGATCCA
TCAAGTTAAAGAAATTTTTCTGAATTAATATGTACTAATTCTCTATCTAA
ATCATATGAATACCCATTCCCACTAAAAAGTTCATACTACATTCTAAGTG
ATTGTTTTCTCACCCCCCCTACATCTACAATTACCAGATCCATGATAAAA
AAAATCACATTTAAAGAAACATACCAATTAAAATTATCACTATTCTATTA
CTCACCCATATTAAATATTATAAGTGCTACATATCTACCAATAACTTTTA
GTATTCAATTTATTATACATGATATTCGCTCATTTACTATTACCATAATG
TTACTAACAATACGTATTTTTACAATCAAACTACCATATAAATTTAACAT
GTACTCTCTATATATCTATCACAGCCCGTTAAATATACCCTCATTATATT
TTTCATCAATAAAACCTCGTTCATGCCTTAACAATACAA

Query= MSMg01no194_m12.b1 MSMg01no194_m12.b1 CHROMAT_FILE:
MSMg01no194_m12.b1 PHD_FILE: MSMg01no194_m12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:46 2005
         (681 letters)



>mm_chr5_65593423_65594504
          Length = 1082

 Score =  959 bits (496), Expect = 0.0
 Identities = 533/552 (96%), Gaps = 15/552 (2%)
 Strand = Plus / Minus

                                                                       
Query: 48  cacggaagagacagtatgggcacaggttaggtgtggacacatacatacatagccactatt 107
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 551 cacggaagagacagtatgggcacaggttaggtgtggacacatacacacatagccactatt 492

                                                                       
Query: 108 tcaaacagccactcttttcttaccctgttactgcgaggtagtttcctgatgatttttgcc 167
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 491 tcaaacagccactcttttcttaccctgttactgcaaggtagtttcctgatgatttttgcc 432

                                                                       
Query: 168 aggcaaattgtatcggagcaccaagccaagacttttctagcagggagaaaacacgctaaa 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 aggcaaattgtatcggagcaccaagccaagacttttctagcagggagaaaacacgctaaa 372

                                                                       
Query: 228 aaaataaacaaataaacacaagttttacatttt-aaaaagatgatgtgttggtcagaaaa 286
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 371 aaaataaacaaataaacacaagttttacatttttaaaaagatgatgtgttggtcagaaaa 312

                                                                       
Query: 287 atatgtcaaagtttaatcatgcagatatgcagaaagcagaatga-tcgatgatgtttatt 345
           |||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||
Sbjct: 311 atatgtcaaagtttaatcatgcagatatgcagaaagcagaatgagt-gataatgtttatt 253

                                                                       
Query: 346 caaaaa--------taaataaataaatagctaaataacagtgtgggccaggcatggtggc 397
           ||||||        |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 252 caaaaacaaataaataaataaataaatagctaaataacagcgtgggccaggcatggtggc 193

                                                                       
Query: 398 ttacacctttaatccctgcacttgacagatagagggatctctgtgacattcagggcagcc 457
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ttacacctttaatccctgcacttgacagatagagggatctctgtgacattcagggcagcc 133

                                                                       
Query: 458 tggttcacacagtgagttacaggccagccagggacacagagtaagaccctgtttccaaac 517
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 tggttcacacagtgagttacaggccagccagggacacagagtaagaccctgtttccaaac 73

                                                                       
Query: 518 aaacaaacaaacaaacaaa----ttaatgataactgaacaaaacaaaatcaacatcagtc 573
           |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 72  aaacaaacaaacaaacaaacaaattaatgataactgaacaaaacaaaatcaacatcagtc 13

                       
Query: 574 aaaggtaagtag 585
           ||||||||||||
Sbjct: 12  aaaggtaagtag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1082
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1072
Effective search space:   719312
Effective search space used:   719312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)