Query= MSMg01no194_o13.b1 MSMg01no194_o13.b1 CHROMAT_FILE:
MSMg01no194_o13.b1 PHD_FILE: MSMg01no194_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:56 2005
(687 letters)
>mm_chr5_79108735_79109822
Length = 1088
Score = 1253 bits (648), Expect = 0.0
Identities = 675/684 (98%), Gaps = 4/684 (0%)
Strand = Plus / Plus
Query: 7 gaattccttactttctgcacaaa-atttgagacaaagcaatacgcttgtagtccctgttc 65
||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccttactttctg-ataaacatttgagacaaagcaatacgcttgtagtccctgttc 264
Query: 66 ctagatggtgacagtatttgcctttacaagtgtttcacatgaaatccaacaattatcatc 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctagatggtgacagtatttgcctttacaagtgtttcacatgaaatccaacaattatcatc 324
Query: 126 ttatcttgtcacttggtgtccaataggacaaaagatttctttgatagataattatagtta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttatcttgtcacttggtgtccaataggacaaaagatttctttgatagataattatagtta 384
Query: 186 ttaaaagtatcacaatcctgttgcagaagaaagaaaaatactattatgtagagttgacct 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 385 ttaaaagtatcacaatcctgttgcagaagaaagaaaaatactattatgtagagtttacct 444
Query: 246 tatactaacattctgtcatttgagaatttagagtctacttagacttgttcagtcaaag-a 304
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct: 445 tatactaacattctgtcatttgagaatttagagtttacttagacttgttcagtcaaagga 504
Query: 305 aggatggcttggtattttctgttattactaaacatttatttaatattaagatttaaattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aggatggcttggtattttctgttattactaaacatttatttaatattaagatttaaattt 564
Query: 365 agcataacatgcaatgtgttgcattaggaaatttcatggtgaatggaaggtgaatagaat 424
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agcataacatgtaatgtgttgcattaggaaatttcatggtgaatggaaggtgaatagaat 624
Query: 425 tattctttcctaccctcatctttcagcccttctccatatttctggcttatatagtcttcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tattctttcctaccctcatctttcagcccttctccatatttctggcttatatagtcttcc 684
Query: 485 aaatacacacccttccttgtcatataacttgtattacatcatcctgtacttccttctttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaatacacacccttccttgtcatataacttgtattacatcatcctgtacttccttctttt 744
Query: 545 aagatatgttcccctctctcatcatacaaattcctcaaatacacatttggcacatgagag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aagatatgttcccctctctcatcatacaaattcctcaaatacacatttggcacatgagag 804
Query: 605 aagacatgtggacatattgtcctttctgaaaaaat-ttcctcaacatctttgccaactgt 663
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 805 aagacatgtggacatattgtcctttctgaaaaaaaattcctcaacatctttgccaactgt 864
Query: 664 atatcaaggagagagaaagcccta 687
||||||||||||||||||||||||
Sbjct: 865 atatcaaggagagagaaagcccta 888
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1088
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1078
Effective search space: 729806
Effective search space used: 729806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no194_o13.g1 MSMg01no194_o13.g1 CHROMAT_FILE:
MSMg01no194_o13.g1 PHD_FILE: MSMg01no194_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:56 2005
(675 letters)
>mm_chr5_79182665_79183739
Length = 1075
Score = 1098 bits (568), Expect = 0.0
Identities = 611/630 (96%), Gaps = 12/630 (1%)
Strand = Plus / Minus
Query: 55 cctattatgcagaaaggaagtgacaaaagaggtcctcaattactgtcttcattgatatcc 114
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1075 cctattatgcagaaaggaagtgacaaaagaggtcctcaattactgtctacattgatatcc 1016
Query: 115 ctgcctctgtggagaactgagataatatcccactttagaggaacaagtttgtaggttact 174
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1015 ctgcctcagtggagaactgagataatatcccactttagaggaacaagtttgtaggttact 956
Query: 175 tctgagcttttattggggatcagtgtatgacacagggtataagtttgaaccaggtagtta 234
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 tccgagcttttattggggatcagtgtatgacacagggtataagtttgaaccaggtagtta 896
Query: 235 aggaaagctctctgaattaatatgtctagtttctccaggg-caagcggatgaataatcat 293
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 895 aggaaagctctctgaattaatatgtctagtttctcc-gggccaagcggatgaataatcat 837
Query: 294 tcccactaaaacgttcatactacattctaagtgattgtctgctaatataaatagattt-a 352
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 836 tcccactaaaacgttcatactaaattctaagtgattgtctgctaatataaatagatttaa 777
Query: 353 aaattacaagatcaatggaaaataaaattacatttaaagaaatatattaatttaaatcat 412
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 776 aaattacaagatcaatgaaaaataaaattacatttaaggaaatatattaatttaaatcat 717
Query: 413 cattattctagtactcacatatattatatatgatatgtgctacatactatgaataatttc 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 cattattctagtactcacatatattatatatgatatgtgctacatactatgaataatttc 657
Query: 473 tagtactcacatatattatatatgatatgtgctacatactatgaataatatgttatatat 532
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 656 tagtactcacatatattatatatgatatgtgctacatactatgaataatatgt--tacat 599
Query: 533 atatgtataatatagcatattatatgcaaactaatatgtaatatgtagtatgtagcatgt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 atatgtataatatagcatattatatgcaaactaatatgtaatatgtagtatgtagcatgt 539
Query: 593 aatataatatatactagaatttacacatgtataaac-------atgtaatgtgtaatata 645
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 538 aatataatatatactagaatttacacatgtataaacatgtaaaatgtaatgtgtaatata 479
Query: 646 atatatactagattgtatacatatatacat 675
||||||||||||||||||||||||||||||
Sbjct: 478 atatatactagattgtatacatatatacat 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 7
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space: 708225
Effective search space used: 708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
