BAC Information

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BAC

Clone NameMSMg01-196H17
Chromosome5 (Build37)
Map Location 106,435,068 - 106,435,357
singlet/doubletsinglet
Overlap genenone
Upstream gene5830443L24Rik, BC057170, Gbp4, LOC675363, LOC626578, Mpa2l, EG634650, Lrrc8b, Lrrc8c, Lrrc8d, LOC100042335, D830014E11Rik, LOC100042349, Zfp326, LOC626723
Downstream geneLOC546882, LOC671295, 4930458A03Rik, Barhl2, EG666892, LOC100042389, Zfp644, LOC100042400, EG666922, Hfm1, Cdc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196H17.T7 (MSMg01no196_h17.b1)MSMg01-196H17.TJ (MSMg01no196_h17.g1)
ACCAG384580AG384581
length752754
length of high quality
(start - end)
---288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no196_h17.b1 PHD_FILE: MSMg01no196_h17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:02 2005CHROMAT_FILE: MSMg01no196_h17.g1 PHD_FILE: MSMg01no196_h17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGG
AATTCTGATTGATTTCCGACAAGATTAGTTCGTTATCTGCATTCTTTACT
CCTGACGAATTCATCCTATTTTTCTCTTCCGACGATTCTGCCAAACATGA
CTCGCCTCTGAGCATGTAGACATAGCCCCTTAATGAGGCTAACXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCCTCTGAATCTGAACCTCCGGCTAATGTATCCTAGATXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XX
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGTCCTCATGTTTATAGGCAAAC
ACTGTGGCAATTGAACCATCTCTGCAGCGCCTGATAGCCATGTATTTTTT
TTTTAGTGAACAATTATGAAATTAATGTTTTGGGTAGAAAAGAGTCAAAT
GGATGTGGGTTCTTCCCAAGTATAGGAAACAGATTATATGATTAAAAATT
CAGGTTCCTAGAAGTCAATTTCAGAGCCAGTTTAGAAGAAGAGAGTCTAG
GATTTAACACTTAGCAATAAATGTGCATGGCTCTTGACGCAGAGGCATGG
GAACCGCCCATCTGCCTTTATGCACCCATGCCCCCTGCTTGTGTTGGACA
CAAGACTGACAAGAACATCGAGCAATGAGGAAAACACAATACACACACTG
AGCATCCATAAAGAGCAGCTCACGCAAGGCCTTGGTGAGTCTTCTGAACA
GAAAATTTGATACTCGGTCTGAGATGGTTCTTTTAACATTTTGTGACCAA
CAGCAACTTACGGCATACACCCATTGTTTCTCTCATTGTTTCTCTCAGGA
AAGCTGGTCTTTTCCAGTTGCCATATTTACCTGATGTAATATGGAATAAG
CTTCAAAGAAAACCATTTCATTTTCTGGGCAGAACTCATAGCCAACCTGA
TTCTGACTCCCACCATATCTCCCGATTGTTTTCGGGCTCCTTCCCCCAAC
GAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_h17.g1 MSMg01no196_h17.g1 CHROMAT_FILE:
MSMg01no196_h17.g1 PHD_FILE: MSMg01no196_h17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:02 2005
         (288 letters)



>mm_chr5_106434813_106435502
          Length = 690

 Score =  518 bits (268), Expect = e-151
 Identities = 284/290 (97%), Gaps = 2/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtcctcatgtttataggcaaacactgtggcaattgaaccatctctgcagcgcctgata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 545 aggtcctcatgtttataggcaaacactgtggcaattgaaccatctctgcagcatctgata 486

                                                                       
Query: 61  gccatgta--ttttttttttagtgaacaattatgaaattaatgttttgggtagaaaagag 118
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 485 gccatgtattttttttttttagtgaacaattatgaaattaatgttttgggtagaaaagaa 426

                                                                       
Query: 119 tcaaatggatgtgggttcttcccaagtataggaaacagattatatgattaaaaattcagg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 tcaaatggatgtgggttcttcccaagtataggaaacagattatatgattaaaaattcagg 366

                                                                       
Query: 179 ttcctagaagtcaatttcagagccagtttagaagaagagagtctaggatttaacacttag 238
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 365 ttcctagaagtcaatttcagagccagtttagaagaagagagtctgggatttaacacttag 306

                                                             
Query: 239 caataaatgtgcatggctcttgacgcagaggcatgggaaccgcccatctg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 caataaatgtgcatggctcttgacgcagaggcatgggaaccgcccatctg 256


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 690
Length adjustment: 9
Effective length of query: 279
Effective length of database: 681
Effective search space:   189999
Effective search space used:   189999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)