BAC Information

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BAC

Clone NameMSMg01-196N17
Chromosome5 (Build37)
Map Location 89,616,353 - 89,616,600
singlet/doubletsinglet
Overlap geneSlc4a4
Upstream geneLOC100039941, LOC630942, EG665615, Muc10, Amtn, LOC100039963, EG665631, Ambn, Enam, Igj, Crlz1, Rufy3, Grsf1, Mobkl1a, Dck, Mkrn1-ps1
Downstream geneGc, LOC622870, Npffr2, LOC631105, Adamts3, EG665733
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-196N17.T7 (MSMg01no196_n17.b1)MSMg01-196N17.TJ (MSMg01no196_n17.g1)
ACCAG384808
length766847
length of high quality
(start - end)
---249 (127 - 375)
definitionCHROMAT_FILE: MSMg01no196_n17.b1 PHD_FILE: MSMg01no196_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:32 2005CHROMAT_FILE: MSMg01no196_n17.g1 PHD_FILE: MSMg01no196_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXX
GATATTGTCGTGCGTACCTTCTCCTTCTTTCCCCTCTATTTTNNTNNTTA
CTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTGGCGCCTGGTGCTCTCCATT
CTTTTCAGAGGGGCACATCCGTCCTCTATCCTGACCTGTGACTGGTCTAT
TGGATCAGCCTCAAAGTCAGAACCTTCTAGGGGCAAGCTTCTAGGAGGAA
CATCACAGCATAATGTGTGATTGTCTGTGGCAGATGGCTCAAGGCATTCA
CATGAATGCTCTTCAAGAGTCCCACACCAGCAAACGATTGCCAGCATGAA
ACAATGCTGCTATTGCTGCATACTTGTTACAAAAGAAAAGGGAGCTTAAA
GATACAGCAGTTTAGGTTCATGCAAGGACCTAGCCCTCGATAGACTACTA
TGAATTAGGTAAAACCCCCCCCTCTTAAATAGAAAAACACTCCATGTGGC
TGGCTCATGTGTGTCTTCTACTCATACAAAGGAGGTTCACATCTCAATCT
GGAGTACTCATGATCTACTATTGTTTATACATCCTAGCTATTCCTATACC
TCTCCCTATTCCCGATAGTATCCATCAGTTTCTATCCTTTCTAGCCTATG
TTTTTATTGTACTCTATTTTTCCTCCATTCTCTCCTATCATCTCCTTCTC
CTTTTTCTATCTTATCCTCGCTTATTTTTTATTTTCCTCGCTTCTTCTTC
TTTACTTTTCATTCATTATCATCACACACTTCACCATCTTCTCTTATATT
TTCTCTCTTCCTTTTCTGGCTCCTTTTATATTACTTTATTCCCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no196_n17.g1 MSMg01no196_n17.g1 CHROMAT_FILE:
MSMg01no196_n17.g1 PHD_FILE: MSMg01no196_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:32 2005
         (249 letters)



>mm_chr5_89616153_89616800
          Length = 648

 Score =  435 bits (225), Expect = e-126
 Identities = 243/249 (97%), Gaps = 1/249 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactggcgcctggtgctctccattcttttcagaggggcacatccgtcctctatcctgacc 60
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 201 cactggcgcctggtgctctccattcttttcaga-gggcacatcagtcctctatcctgacc 259

                                                                       
Query: 61  tgtgactggtctattggatcagcctcaaagtcagaaccttctaggggcaagcttctagga 120
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 260 tgtgactggtctattggatcagcctcaaagtcagaaccttctagcgtcaagcttctagga 319

                                                                       
Query: 121 ggaacatcacagcataatgtgtgattgtctgtggcagatggctcaaggcattcacatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggaacatcacagcataatgtgtgattgtctgtggcagatggctcaaggcattcacatgaa 379

                                                                       
Query: 181 tgctcttcaagagtcccacaccagcaaacgattgccagcatgaaacaatgctgctattgc 240
           ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 380 tgctcttcaagagtctcacaccagcaaacgattaccagcatgaaacaatgctgctattgc 439

                    
Query: 241 tgcatactt 249
           |||||||||
Sbjct: 440 tgcatactt 448


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 648
Length adjustment: 9
Effective length of query: 240
Effective length of database: 639
Effective search space:   153360
Effective search space used:   153360
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)