XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAAAA
TACCACTTGGTGAAATAGTCTACTCCAAAAACCAACCAACCAAAAAAACA
AACAAACAACAACAACAACAACAAAACAACAACAATTTCTTACAAAGGCA
TTAACATATATCCTGGGTGTGGTACTTAATTTTTCCTCTCCTTACAGTGC
TTCATCTACTAAAACCACGACAAAGACCAATGGACTGTTTGAGCTGGTGA
CCCAGAATCTTAAATAAGTTTCTATGAACTGGTTTTATTGGAAAGGAGGA
AGACCTGAGAGAGGCTCCAGGTCTCCATCACAGGCTGCACTGTCTGGACA
CTCCCACCTTCCAAGTGATCACACTGGTTGAACGAAGAGATTTCTTTTCT
TGGGGTAGCCCTTTGCAGTAGCAACTGTGGGCAATAAAACATGAATGGGT
TGGATAAACCTTAATATTTAGATTGTATCAGAGCCTAACACCTGCCACTT
CCCTCTCCCGTTTTAATTTTCTCTCCATCCTCACAATGGTAAAGTAAGGT
TGAGTAACATTTCTTTGTGTAAATTATAGTCAGCCTCCTGGGCAATTTAA
TCTGCATTTACAGGCTATAAAAAAGTAAAGTAAAATTCTATAGTTTAGTC
TCCAAATGATAGTATCTAAATATTTTCTTTTAGAGTTTTAATCTTTAAAT
CTTTGTCATATTATGTAACACATAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAGACATACAGTCAACTA
ACCTTGATGTTTGGGGCTCTCAGAAACTGATCCACCAACAAAAAACGTAT
ATACAGACTGGACTAGGCCTCCCACACATGTGTAGCAGATGTGCAGTTTG
GTCTTTATGTGGGTCCTAAACAACTGGAGCGGGGGCTATCCCAAAAGCTG
TTGCTTGTCTGTGTGATATGTTCTAGCTGAGGTGCTTTGTTTGGCCTCAG
TGGGAGAGGATGCACCTAGATCCATAGACTTGCTGTGTCAGGTACGAGGG
TGCCCGGGGCTGGGGGTGGCGCCCGCCCCCCCNNNNNNNTNNTTTTTTTT
TTTTTTTTTCTTTCCCCCCCCTAAAAAAAAACACTTATGTTGTGTGTGTT
TTCTTCTTTATATTATCTCTTCTTCTCACCTTTCATTCACTCTACTACTG
TATATATATCTTAAACCCAATCATTCTCACTACTCTCTTTCCTTCTTCTT
CGTTATCTTTATTTTTCCTCCCCTCAATTAACTTTACATTAATATGCATG
TTCGTTTTAGATCTCTTGAATTCATTTAACTTTATCCCCTTTTATTTTTT
ATTCCCTCTTTCCTTTTCTTTCTCTTAGTTTTTTATCTCCTCCCCGCTCA
TAATAATCATTCATCACCTTATCCCTCCTCCTTTTCTTATCTACCAT

Query= MSMg01no196_p07.b1 MSMg01no196_p07.b1 CHROMAT_FILE:
MSMg01no196_p07.b1 PHD_FILE: MSMg01no196_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:40 2005
         (650 letters)



>mm_chr5_55014694_55015741
          Length = 1048

 Score = 1104 bits (571), Expect = 0.0
 Identities = 628/649 (96%), Gaps = 6/649 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccaaaataccacttggtgaaatagtctactccaaaaaccaaccaaccaaaa--- 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
Sbjct: 946 ggaattccaaaataccacttggtgaaatagtctactccaaaaaccaaccaaccaaaaaat 887

                                                                       
Query: 61  aaacaaacaaacaacaacaacaacaacaaaacaacaacaatttcttacaaaggcattaac 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 aaacaaac-aacaacaacaacaacaacaaaacaacaacaatttcttacaaaggcattaac 828

                                                                       
Query: 121 atatatcctgggtgtggtacttaatttttcctctccttacagtgcttcatctactaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 atatatcctgggtgtggtacttaatttttcctctccttacagtgcttcatctactaaaac 768

                                                                       
Query: 181 cacgacaaagaccaatggactgtttgagctggtgacccagaatcttaaataagtttctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cacgacaaagaccaatggactgtttgagctggtgacccagaatcttaaataagtttctat 708

                                                                       
Query: 241 gaactggttttattggaaaggaggaagacctgagagaggctccaggtctccatcacaggc 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 707 gaactggttttataggaaaggaggaagacctgagagaggctccaggtctccatgacaggc 648

                                                                       
Query: 301 tgcactgtctggacactcccaccttccaagtgatcacactggttgaacgaagagatttct 360
           ||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||
Sbjct: 647 tgcactgtctggacactcctaccttccaagtgatcacactggctgaatgaagagatttct 588

                                                                       
Query: 361 tttcttggggtagccctttgcagtagcaactgtgggcaataaaacatgaatgggttggat 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 587 tttcttggggtagccctttgcagtagcaactgtgggcaataaaacatgaatgagttggat 528

                                                                       
Query: 421 aaaccttaatatttagattgtatcagagcctaacacctgccacttccctctcccgtttta 480
           ||||||| ||||||||| || |||||||||||||||||||  ||||||||||| ||||||
Sbjct: 527 aaaccttgatatttagactgcatcagagcctaacacctgctgcttccctctcctgtttta 468

                                                                       
Query: 481 attttctctccatcctcacaatggtaaagtaaggttgagtaacatttctttgtgtaaatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 attttctctccatcctcacaatggtaaagtaaggttgagtaacatttctttgtgtaaatt 408

                                                                       
Query: 541 atagtcagcctcctgggcaatttaatctgcatttacaggctataaaaaagtaaagtaaaa 600
           |||||||||||| ||||||||||||||||||||||||| ||||||||||  |||||||||
Sbjct: 407 atagtcagcctcttgggcaatttaatctgcatttacagactataaaaaa--aaagtaaaa 350

                                                            
Query: 601 ttctatagtttagtctccaaatgatagtatctaaatattttcttttaga 649
           |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 349 ttctatagtttagtctccaaattatagtatctaaatattttcttttaga 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1048
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1038
Effective search space:   664320
Effective search space used:   664320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)