BAC Information

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BAC

Clone NameMSMg01-197A21
Chromosome5 (Build37)
Map Location 71,502,303 - 71,502,611
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg1, Gabra2
Downstream geneLOC635092, 4930503B16Rik, Gabra4, Gabrb1, LOC666545
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197A21.T7 (MSMg01no197_a21.b1)MSMg01-197A21.TJ (MSMg01no197_a21.g1)
ACCAG384935AG384936
length685707
length of high quality
(start - end)
310 (376 - 685)34 (301 - 334)
definitionCHROMAT_FILE: MSMg01no197_a21.b1 PHD_FILE: MSMg01no197_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:48 2005CHROMAT_FILE: MSMg01no197_a21.g1 PHD_FILE: MSMg01no197_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTAAGTCCCTGTAATTCTCTTCTCACATCATTGTTTATTTTCCTCTT
TTGCATTTTCATGAGGTCCTTATTTCTTCAGAGAAGTAATAGTTTAGTCC
ATTCGATTGGCAAACAAGTTGACACCATAAGATGCCTTAAAAATGTTGAC
TTTAGGACCTCATATACTGGAGGTTTTAAAGGGTCCCTAAGTGCCACTTT
AACTTACCCTTCCATTCATTTATACTGAAGATAGTGTCTGACCTGTAAAG
TGAACATTACCAAAGTGCTACTAATTTGATCATCGCATAATTTAGGAGTT
CTCTGATTATCTCTTACACCCTCAAAAGATAATTTACACTTTGTATTTTT
AGATACAATTAGCCTTAAGATATTAGTATGAGTATAATACATGCACATAG
ATAAGTTAAATTTAACTCAGAACCTAAGGGATCGTCATTAATCTCATAAA
ATTTCAGTGTGAACCATACACTTTATGTTAACTATTTAGCATAAAACCTG
TGAGAAGTAGCTTCATTAACAATTATATTGTGATTTGAGACGTGGGAAAA
GTTAACAGAAGTTTAAGAAGAGCCAAATTCTTTCTAGACATAGAGGAAAA
GAGGGCTCATTCTGATTTGAAAAGAGCTTTCAACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTAGCCAGTGCTCTCCACTCAGTTATACACACTGCTCTACTC
TATTCCCATAATGCTTAAAGATGATAGTTCTCTTGTTTCATTTATTTCCA
GCGCTGGTATTATAGGAGTGAGTTTTCTTCCCCCCTTTGTGTGCATCCTG
TGGGTTGAATCCAGATCCTGATGCTTGAGTGGCAATCTCCTTTAGCTGGT
GAGGCATCTTGCTAGCTCTGAAATGCTATTATCTAAATCTGTGAAGGACA
GACCTTTCTTTGAACTTCTTTGGCATCCCTCATATTCTAGGAGTCTCCTG
ATACACATCGCCCCACCATAGATAAATATATGATTATTTCCTGAATCATT
GACTTATTAAAAATATTATTCTCTGCTTTGGATGCAACTTTATATGTTCA
GGCTTTTAACAAATGTGTGCTAAGGTGTCTTTCGAGTGTTTGTATTGCTT
TCATTTTATAATAGACTATGATTGTAAACAGCCTATCAAGGTAAATGGAT
TTGGAGAGATATCAAATGCATAATTTAATAGACAGACCTGTCTTTAGAGA
TAATCCAATCATCTCAGAACCATACACAGTATGGTTTCTTTGCTAAAAGA
AAAATGTGGTTGCTCTATTACAAGTTATATAGAAGAGAAAACAAACTATG
CTTCGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_a21.b1 MSMg01no197_a21.b1 CHROMAT_FILE:
MSMg01no197_a21.b1 PHD_FILE: MSMg01no197_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:48 2005
         (310 letters)



>mm_chr5_71502103_71502812
          Length = 710

 Score =  559 bits (289), Expect = e-164
 Identities = 304/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagataatttacactttgtatttttagatacaattagccttaagatattagtatgagtat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aagataatttacactttgtatttttagatacaattagccttaagatattagtatgagcat 260

                                                                       
Query: 61  aatacatgcacatagataagttaaatttaactcagaacctaagggatcgtcattaatctc 120
           ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aatacatgcacatagataaattaaatttaactcataacctaagggatcgtcattaatctc 320

                                                                       
Query: 121 ataaaatttcagtgtgaaccatacactttatgttaactatttagcataaaacctgtgaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataaaatttcagtgtgaaccatacactttatgttaactatttagcataaaacctgtgaga 380

                                                                       
Query: 181 agtagcttcattaacaattatattgtgatttgagacgtgggaaaagttaacagaagttta 240
           ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 381 agtagcttcattaacaattatattgtgatttgagacgtgtgaaaagttaagagaagttta 440

                                                                       
Query: 241 agaagagccaaattctttctagacatagaggaaaagagggctcattctgatttgaaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaagagccaaattctttctagacatagaggaaaagagggctcattctgatttgaaaaga 500

                    
Query: 301 gctttcaac 309
           |||||||||
Sbjct: 501 gctttcaac 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)