Query= MSMg01no197_d12.b1 MSMg01no197_d12.b1 CHROMAT_FILE:
MSMg01no197_d12.b1 PHD_FILE: MSMg01no197_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:01 2005
(669 letters)
>mm_chr5_86552071_86553139
Length = 1069
Score = 1236 bits (639), Expect = 0.0
Identities = 657/665 (98%), Gaps = 4/665 (0%)
Strand = Plus / Plus
Query: 5 gaattcacagaattttgagcaatagatttctctaataaaagatggtaaacatacacaagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcacagaattttgagcaatagatttctctaataaaagatggtaaacatacataagc 264
Query: 65 agatgaacaattaactctgcttttaaagaattaaaagttcagctttaataacggtatttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agatgaacaattaactctgcttttaaagaattaaaagttcagctttaataacggtatttt 324
Query: 125 ttaaatcagtttgtactcctagtcagcaattgagacaattaggtagctctgtaggcaaaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaaatcagtttgtactcctagtcagcaattgagacaattaggtagctctgtaggcaaaa 384
Query: 185 gaacttgttccatagcattagaacccaactttcaggccccgaatctcccacacaaaactg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaacttgttccatagcattagaacccaactttcaggccccgaatctcccacacaaaactg 444
Query: 245 gacagacacagtgagtggatctgcaaccctagcgcttctatggagagatgggaggcagag 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 gacagacacagtgagtggatctgcaaccctagcacttctatggagagatgggaggcagag 504
Query: 305 aaggaagacccttggaagcctgtacgccacctagcctggtacacacaacagcaaaccaac 364
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 aaggaagacccttggaagcctgtaggccacctagcctggtacacacaacagcaaaccaac 564
Query: 365 aaagagcttctttctcaagcaagtcggaaagcaggactaatgcccaagtacccaagttta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaagagcttctttctcaagcaagtcggaaagcaggactaatgcccaagtacccaagttta 624
Query: 425 ccctctgacttgtgtgtgtgtgtcatggcatgtgtacaacccacatggtcacctacatat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccctctgacttgtgtgtgtgtgtcatggcatgtgtacaacccacatggtcacctacatat 684
Query: 485 atttattctcatattccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgcgtg 544
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 685 atttattctcatattccctgtgtgtgtgtgtgtgtgtgtgtgtgtg----cgtgcgcgtg 740
Query: 545 tgcatgtgcgtgcaccctttccttattcccgatgatccaatacagtatgcctagctagac 604
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcatgtgcgcgcaccctttccttattcccgatgatccaatacagtatgcctagctagac 800
Query: 605 ctggtcaacatctaaagcataaaaacagtaagaattacaatgtaacacttaatataattt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctggtcaacatctaaagcataaaaacagtaagaattacaatgtaacacttaatataattt 860
Query: 665 ggaga 669
|||||
Sbjct: 861 ggaga 865
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_d12.g1 MSMg01no197_d12.g1 CHROMAT_FILE:
MSMg01no197_d12.g1 PHD_FILE: MSMg01no197_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:01 2005
(409 letters)
>mm_chr5_86687888_86688696
Length = 809
Score = 745 bits (385), Expect = 0.0
Identities = 403/409 (98%)
Strand = Plus / Minus
Query: 1 caacttatagaaaattacaaagtaaattaaagtttagagtatgcttaacacttttaacat 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 609 caacttatagaaaattacaaagtaaattaaagtttagagtatgcttaaaacttttaacat 550
Query: 61 gaataaaagagggtcactgagataacatgtaacatagaagcactgggcacagcctgatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gaataaaagagggtcactgagataacatgtaacatagaagcactgggcacagcctgatga 490
Query: 121 ctcgagttccattctaatacactctgaataacatgcatgccaacacacatacaataaata 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 489 ctcgagttccattctaatacactctgaataacatgcatgccaacacacacacaataaata 430
Query: 181 attttcatttttaaatgaataagacatcatgagcagaatgtctggattaatttgggaaaa 240
||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 429 attttcatttttaaatgaataagacatcatgagcaaaatgtctagattaatttgggaaaa 370
Query: 241 ttgttttggaggattctaaacagagttaaaaacttgattcaatatcaaaagagggctatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttgttttggaggattctaaacagagttaaaaacttgattcaatatcaaaagagggctatt 310
Query: 301 tcatgtaacaatcgatttagggatgttgtttaaaaatcatactcacataccaccctgggt 360
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 309 tcatgtaacaatcgatttagggatgttgtttaaaaatcacattcacataccaccctgggt 250
Query: 361 ccaccctgggttgacaatagacaaaagctgttgtggcaaagcatgtaac 409
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ccaccctgggttgacaatagacaaaagctgttgtggcaaagcatgtaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
