Query= MSMg01no197_h04.b1 MSMg01no197_h04.b1 CHROMAT_FILE:
MSMg01no197_h04.b1 PHD_FILE: MSMg01no197_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:20 2005
(643 letters)
>mm_chr5_60450563_60451609
Length = 1047
Score = 1135 bits (587), Expect = 0.0
Identities = 626/641 (97%), Gaps = 8/641 (1%)
Strand = Plus / Plus
Query: 5 gaattcttagct--tgccaactatattagcacaacagaacaatacacatgagtaaacttg 62
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagcaagtg--aactatattagcacaacagaacaatacacatgagtaaacttg 262
Query: 63 aatatcacagcagtgcaaatttgaaggtttttttgagttagatgattaattttattattt 122
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 263 aatatcacagcagtggaaatttgaaggtttttttgagttagatgattatttttattattt 322
Query: 123 ttaagttaatgtataatttgctaatagaaaactactgcataaagagtaacagtttctaag 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttaagttaatgtataatttgctaatagaaaactactgcataaagagtaacagtttctaag 382
Query: 183 tatataacaatgtatggatggcagtcagtaaaatatggtcatatctgccttatttactca 242
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 383 tatataacaatgtatgaatggcagtcagtaaaatatggtcatatctgctttatttactca 442
Query: 243 acgtattatgggaaatataaagaaaataaaagaataaaaagtaacatcaaattataaact 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acgtattatgggaaatataaagaaaataaaagaataaaaagtaacatcaaattataaact 502
Query: 303 acagtaaggcttgatgtctgttggttaatttatgacttctggctcaagtatctgtaccat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acagtaaggcttgatgtctgttggttaatttatgacttctggctcaagtatctgtaccat 562
Query: 363 tgaacaactaatatgcatacgttctgaaagcatactttgcatgtatttgcacatgtatgt 422
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgaacaactaatatgcatacattctgaaagcatactttgcatgtatttgcacatgtatgt 622
Query: 423 gtgtagaagtcaatggagatgtttacttgggaggccatatagattttcttccattactca 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtgtagaagtcaatggagatgtttacttgggaggccatatagattttcttccattactca 682
Query: 483 tagttgtagacaaacaaatg-acttacaaggagttttatgtcctctcctccaatattatt 541
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tagttgtagacaaacaaatggacttacaaggagttttatgtcctctcctccaatattatt 742
Query: 542 ttccatagaagcagggattatggttacggatggaattcagtttcctccttaatatttaga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttccatagaagcagggattatggttacggatggaattcagtttcctccttaatatttaga 802
Query: 602 aacaaa-ataata--cactgatcataaggatggtgtaaaaa 639
|||||| |||||| |||||||||||| |||||||||||||
Sbjct: 803 aacaaagataatatacactgatcataatgatggtgtaaaaa 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1047
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1037
Effective search space: 656421
Effective search space used: 656421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no197_h04.g1 MSMg01no197_h04.g1 CHROMAT_FILE:
MSMg01no197_h04.g1 PHD_FILE: MSMg01no197_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:21 2005
(457 letters)
>mm_chr5_60490841_60491697
Length = 857
Score = 609 bits (315), Expect = e-178
Identities = 324/327 (99%)
Strand = Plus / Minus
Query: 1 ataagagaggactgaactgaatatcactcatctggggtaagattaaaattcaatatttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ataagagaggactgaactgaatatcactcatctggggtaagattaaaattcaatatttaa 467
Query: 61 gagttggatgtgttataatctcagaactcaggaagctaaaacaggaaaatattcagtctg 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 466 gagttggatgtgttataatctcagaattcaggaagctaaaacaggaaaatattcagtctg 407
Query: 121 aggccaacatgggataacttgatggtctcataaaaatatagatcaaaatataaaatatag 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aggccaacatgggataacatgatggtctcataaaaatatagatcaaaatataaaatatag 347
Query: 181 tctcaattaaataataaaaacgtttacaaaactattgtgtcactctattataactggcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tctcaattaaataataaaaacgtttacaaaactattgtgtcactctattataactggcaa 287
Query: 241 cgaacaggatttgttgaattacataaatagaaaataattttaaaatccctagaattttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 286 cgaacaggatttgttgaattacataaatagaaaataattttaaaatccctagatttttgt 227
Query: 301 cttatatttttaaacatattgaaatag 327
|||||||||||||||||||||||||||
Sbjct: 226 cttatatttttaaacatattgaaatag 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
