BAC Information

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BAC

Clone NameMSMg01-197H04
Chromosome5 (Build37)
Map Location 60,450,767 - 60,491,366
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041425, LOC546866
Downstream geneCbfa2t2-ps1, LOC100041498, LOC666597
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197H04.T7 (MSMg01no197_h04.b1)MSMg01-197H04.TJ (MSMg01no197_h04.g1)
ACCAG385175AG385176
length740754
length of high quality
(start - end)
643 (46 - 688)457 (78 - 534)
definitionCHROMAT_FILE: MSMg01no197_h04.b1 PHD_FILE: MSMg01no197_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:20 2005CHROMAT_FILE: MSMg01no197_h04.g1 PHD_FILE: MSMg01no197_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,450,767 - 60,451,405)(60,491,040 - 60,491,366)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGCTTGCCAACTATATTAGCACAACAGAACAATACACATGAGT
AAACTTGAATATCACAGCAGTGCAAATTTGAAGGTTTTTTTGAGTTAGAT
GATTAATTTTATTATTTTTAAGTTAATGTATAATTTGCTAATAGAAAACT
ACTGCATAAAGAGTAACAGTTTCTAAGTATATAACAATGTATGGATGGCA
GTCAGTAAAATATGGTCATATCTGCCTTATTTACTCAACGTATTATGGGA
AATATAAAGAAAATAAAAGAATAAAAAGTAACATCAAATTATAAACTACA
GTAAGGCTTGATGTCTGTTGGTTAATTTATGACTTCTGGCTCAAGTATCT
GTACCATTGAACAACTAATATGCATACGTTCTGAAAGCATACTTTGCATG
TATTTGCACATGTATGTGTGTAGAAGTCAATGGAGATGTTTACTTGGGAG
GCCATATAGATTTTCTTCCATTACTCATAGTTGTAGACAAACAAATGACT
TACAAGGAGTTTTATGTCCTCTCCTCCAATATTATTTTCCATAGAAGCAG
GGATTATGGTTACGGATGGAATTCAGTTTCCTCCTTAATATTTAGAAACA
AAATAATACACTGATCATAAGGATGGTGTAAAAAATGGCACAAGAACTCA
AAAAATAGAAATACTGAGAGGGCTTGTATCACAGTATTGT
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATAAGAGAGGACTGAACTGAATA
TCACTCATCTGGGGTAAGATTAAAATTCAATATTTAAGAGTTGGATGTGT
TATAATCTCAGAACTCAGGAAGCTAAAACAGGAAAATATTCAGTCTGAGG
CCAACATGGGATAACTTGATGGTCTCATAAAAATATAGATCAAAATATAA
AATATAGTCTCAATTAAATAATAAAAACGTTTACAAAACTATTGTGTCAC
TCTATTATAACTGGCAACGAACAGGATTTGTTGAATTACATAAATAGAAA
ATAATTTTAAAATCCCTAGAATTTTGTCTTATATTTTTAAACATATTGAA
ATAGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGT
GGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAGCAGAA
CAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATG
AAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAG
ACCACCAACAGATTTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGG
GGACTAATATCCAACATATATATAGAACTCTAGAAGGTGTACTTTCAAAA
ATCATATAACCCCATTAAAAAATGGGTCTCATAAATGAACCAAGAATTCT
CACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_h04.b1 MSMg01no197_h04.b1 CHROMAT_FILE:
MSMg01no197_h04.b1 PHD_FILE: MSMg01no197_h04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:20 2005
         (643 letters)



>mm_chr5_60450563_60451609
          Length = 1047

 Score = 1135 bits (587), Expect = 0.0
 Identities = 626/641 (97%), Gaps = 8/641 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagct--tgccaactatattagcacaacagaacaatacacatgagtaaacttg 62
           |||||||||||   ||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttagcaagtg--aactatattagcacaacagaacaatacacatgagtaaacttg 262

                                                                       
Query: 63  aatatcacagcagtgcaaatttgaaggtttttttgagttagatgattaattttattattt 122
           ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 263 aatatcacagcagtggaaatttgaaggtttttttgagttagatgattatttttattattt 322

                                                                       
Query: 123 ttaagttaatgtataatttgctaatagaaaactactgcataaagagtaacagtttctaag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttaagttaatgtataatttgctaatagaaaactactgcataaagagtaacagtttctaag 382

                                                                       
Query: 183 tatataacaatgtatggatggcagtcagtaaaatatggtcatatctgccttatttactca 242
           |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 383 tatataacaatgtatgaatggcagtcagtaaaatatggtcatatctgctttatttactca 442

                                                                       
Query: 243 acgtattatgggaaatataaagaaaataaaagaataaaaagtaacatcaaattataaact 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acgtattatgggaaatataaagaaaataaaagaataaaaagtaacatcaaattataaact 502

                                                                       
Query: 303 acagtaaggcttgatgtctgttggttaatttatgacttctggctcaagtatctgtaccat 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 acagtaaggcttgatgtctgttggttaatttatgacttctggctcaagtatctgtaccat 562

                                                                       
Query: 363 tgaacaactaatatgcatacgttctgaaagcatactttgcatgtatttgcacatgtatgt 422
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tgaacaactaatatgcatacattctgaaagcatactttgcatgtatttgcacatgtatgt 622

                                                                       
Query: 423 gtgtagaagtcaatggagatgtttacttgggaggccatatagattttcttccattactca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gtgtagaagtcaatggagatgtttacttgggaggccatatagattttcttccattactca 682

                                                                       
Query: 483 tagttgtagacaaacaaatg-acttacaaggagttttatgtcctctcctccaatattatt 541
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tagttgtagacaaacaaatggacttacaaggagttttatgtcctctcctccaatattatt 742

                                                                       
Query: 542 ttccatagaagcagggattatggttacggatggaattcagtttcctccttaatatttaga 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ttccatagaagcagggattatggttacggatggaattcagtttcctccttaatatttaga 802

                                                    
Query: 602 aacaaa-ataata--cactgatcataaggatggtgtaaaaa 639
           |||||| ||||||  |||||||||||| |||||||||||||
Sbjct: 803 aacaaagataatatacactgatcataatgatggtgtaaaaa 843


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1047
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1037
Effective search space:   656421
Effective search space used:   656421
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no197_h04.g1 MSMg01no197_h04.g1 CHROMAT_FILE:
MSMg01no197_h04.g1 PHD_FILE: MSMg01no197_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:21 2005
         (457 letters)



>mm_chr5_60490841_60491697
          Length = 857

 Score =  609 bits (315), Expect = e-178
 Identities = 324/327 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataagagaggactgaactgaatatcactcatctggggtaagattaaaattcaatatttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ataagagaggactgaactgaatatcactcatctggggtaagattaaaattcaatatttaa 467

                                                                       
Query: 61  gagttggatgtgttataatctcagaactcaggaagctaaaacaggaaaatattcagtctg 120
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 466 gagttggatgtgttataatctcagaattcaggaagctaaaacaggaaaatattcagtctg 407

                                                                       
Query: 121 aggccaacatgggataacttgatggtctcataaaaatatagatcaaaatataaaatatag 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aggccaacatgggataacatgatggtctcataaaaatatagatcaaaatataaaatatag 347

                                                                       
Query: 181 tctcaattaaataataaaaacgtttacaaaactattgtgtcactctattataactggcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tctcaattaaataataaaaacgtttacaaaactattgtgtcactctattataactggcaa 287

                                                                       
Query: 241 cgaacaggatttgttgaattacataaatagaaaataattttaaaatccctagaattttgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 286 cgaacaggatttgttgaattacataaatagaaaataattttaaaatccctagatttttgt 227

                                      
Query: 301 cttatatttttaaacatattgaaatag 327
           |||||||||||||||||||||||||||
Sbjct: 226 cttatatttttaaacatattgaaatag 200


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)