BAC Information

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BAC

Clone NameMSMg01-197M11
Chromosome5 (Build37)
Map Location 33,506,186 - 33,506,478
singlet/doubletsinglet
Overlap genenone
Upstream genePlb1, EG665350, LOC545743, Ppp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1
Downstream geneSpon2, Ctbp1, Maea, 4933407H18Rik, LOC672284, 2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197M11.T7 (MSMg01no197_m11.b1)MSMg01-197M11.TJ (MSMg01no197_m11.g1)
ACCAG385367AG385368
length796729
length of high quality
(start - end)
204 (102 - 305)292 (78 - 369)
definitionCHROMAT_FILE: MSMg01no197_m11.b1 PHD_FILE: MSMg01no197_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:47 2005CHROMAT_FILE: MSMg01no197_m11.g1 PHD_FILE: MSMg01no197_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTAATTTATATTAAAATTTTTGTTTTCTTTTCTTTCTCCCCTAGNNCN
NCTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTACTAAAAAATCTAACCCTGGGCTTTTTGGGGTAGAA
GTCTTTTAATGAGTGCTTCTATTCCCTTAGGGGGTTACAGGATTATTTAA
ATTGTTTACCTGATCTTGATTTGACTTTGGTAAATGGTATCTATCAAGGA
AATCATTTATGTTATTTAGATTTTTCAGTTTTGTAGAGTACAGGCTTTTG
AAGTAAGACCCACCGGTTCTTTGGATTTCTTCAGTCTTTGTCATTATAAC
CCCCCTTTCATTTCTGACTTTGTTGATGTGGGTACTGTCTCTCTTCCTTT
CAGTTTTTTTTTTTTACCCCCCCCCCTCCCTAATTTTTCTATTTTCTCAT
AGAACCAGGGTTCATCCCCCCAAAGAAAAAGATTCTCTTTGTCTGGAATT
GCATGATTTCAGGTCTGCGTTTGATTATTTTTTGTCGTCTACTTCTCTTG
ATTGTGCTTGCCTACTTCAGTTCCCAAATCTTCCCCTCGACATGCCTTAT
TTTCCTAATCACTATAACATGATTCCTACTCCCATAATCGAATCTTTTGC
TTATTTACTTCCCCGCTTTTATACTATTGTCCCCTTGTATTCCTATGCAA
TCTCCCCCCCATCCTTTTCTCTTTTTCCACCTCCCCTTTTCTTTTTTTTC
CCCCCCCCTTACTCTTTTTTCCTATCTTTCTCCCCTCCCTTTTTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGGAGTCTGCTTGTGCCTT
CTTTGACTTCTTTGAACATCTCTATCAGTCATTCTCTTGGTTTTGTTTTC
GAGTTTCACTTAAGTTGCTCTCATTGAGGGATAGAATGGGATTTTTTTTT
AAAATTGGGATCTACCAGCACAGAATTTAATCATTGATTAAGTTCACCTT
GTTTCTGTGGAAGAGTTCCTGGTGCTCAGAAGAGACTAAGTTGTAATTGT
GTGGAGATGGTATTTCCAGAGAGTTGATTACTGCCTGCAACAATCGTCCC
AATCCAGCAATAAACTCACTGTGGAAATAGAGCAGCAGCTGACTACAACA
CAGTCACTCCTGAAGAACCAACCCCTTTAGGGAATAAAGACAGGCGGGGG
CCAGAGTCTCTGCTCACTCCCTGACCTCTGTGGGTAACTGACATTGCGGG
GCTGATATCTCCCTGTACTTGCTGGACTATGATGGTGCTCCGGCTGGGGT
ACCAAGTCTCAGTGATTTCTTTAGTTATTCAGTCGGACCCATGTTGCCAT
TTCAAGTTTTTGCGTACCCTTCTGACCTTATTAGGAAACCTTGGTTTAAC
GCGGGTGTGATCATATACGAAACCCCGCGATTTGTGGAGCCTTTTTATAG
GNNGGGCCGAGCACAAGCCGTTTGTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_m11.g1 MSMg01no197_m11.g1 CHROMAT_FILE:
MSMg01no197_m11.g1 PHD_FILE: MSMg01no197_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:47 2005
         (292 letters)



>mm_chr5_33505986_33506678
          Length = 693

 Score =  503 bits (260), Expect = e-147
 Identities = 285/294 (96%), Gaps = 3/294 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcaggagtctgcttgtgccttctttgacttctttgaacatctctatcagtcattctct 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 493 actcaggagtctgcttgtgccttctttgacttctttgaacatctctat-agtcattctct 435

                                                                       
Query: 61  tggttttgttttcgagtttcacttaagttgctctcattgagggatagaatggga--tttt 118
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||
Sbjct: 434 tggttttgttttcgagtttcacttaagttactctcattgagggatagaatgggatttttt 375

                                                                       
Query: 119 tttttaaaattgggatctaccagcacagaatttaatcattgattaagttcaccttgtttc 178
           ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ttttttaaattgggatctactagcacagaatttaatcattgattaagttcaccttgtttc 315

                                                                       
Query: 179 tgtggaagagttcctggtgctcagaagagactaagttgtaattgtgtggagatggtattt 238
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tgtggaagagttcctgatgctcagaagagactaagttgtaattgtgtggagatggtattt 255

                                                                 
Query: 239 ccagagagttgattactgcctgcaacaatcgtcccaatccagcaataaactcac 292
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 254 tcagagagttgattactgcctgcaacaatcgtcccaattcagcaataaactcac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)