BAC Information

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BAC

Clone NameMSMg01-198O17
Chromosome5 (Build37)
Map Location 79,183,800 - 79,184,094
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039398, Mthfr-ps1, EG384187
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198O17.T7 (MSMg01no198_o17.b1)MSMg01-198O17.TJ (MSMg01no198_o17.g1)
ACCAG386053AG386054
length717757
length of high quality
(start - end)
323 (46 - 368)296 (76 - 371)
definitionCHROMAT_FILE: MSMg01no198_o17.b1 PHD_FILE: MSMg01no198_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:18 2005CHROMAT_FILE: MSMg01no198_o17.g1 PHD_FILE: MSMg01no198_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTTGCAGCCAGCAAAGCTGAAAGGAGTTGAAGATTTTTGACATC
AGACATCGAAATACACTTTAGTTTGCCCAGCTTGTTTTTTGGTATTTCCT
CACTATGGTCTCCTTTGGAAAGTTAATGCATATTCTGTGCCACTGTATGT
TGGAATTATTTGATCTGATTTTTTTTTATTTTGATTCCATTGGAGATCAA
AGTTAAGAGAGTACTTGAATTTCAAAAGAGACTTTGACCTTTGAAACAAG
TTTTAAACAGTTATAGACTATGGTAATTTTGAAATTTGAATGAATGTATA
TATGATATGTTTTCCAGCCCCCGCAGTTTAGTGGTTTGAATAAAAATGGC
CCTCATAGGGTCATACGCAATGATACTATTTGGTATTATGGCTTTGTTGG
AGAAATTGCAGTCTTCTTGGAAGAAGTATGTCTCAGTCTCTTCCTAATAC
CTACATATCCAGATGTAGAACTCTCAGCTACCTCTCCAGCAGGATGTCTG
ACTGCATGCTACCATGTTACTGTGCCATGAGGGGAAAGGACTAAACTTCC
GAACTGTAAGCCACTCTTAGGAAATATTTTCCTGCTATAATGTTTTCATG
CGTAAGCAGTTTTCAAAACTTTGTACTTTGGTCCATTGTCGTTTCTTCTA
TGATTATGATCCCTCCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTAACTTCTCATCACATCTTCTAAT
TAATGTAAGGAGGGAGTGTATGCTCCATCTCTTGCAGTTTCCCACTGGTA
TTTAGAGAGAGAAACAGTCCTGATGGGTCTCACCTAATAGTACTTTACTA
AGTCAGTGGACTTTTCTGGGTCGGGGCTCAGCTTCGGAGAAGGCACTGAT
TACAGCAAAAGCATGAAGAGTTCTGGTGAGCATTCCTCCTATGAGCATGT
CTAGGTTTAAGTACTACAAAGTGTAGTTTGAGGCTAAACACCCTGCTAAA
CCTCTGATTCCCACACTAGGTATTTATGTGTGCACCCACATTCAATCATT
TGCTAGTGGTATGTAGGACATTGGAAATCAGCCTTTTGATTGGGCCATTG
AACTGGAGAACTGTGCCTCTGTGTTACATGGAGTGTGGAAGAGGTATGAC
TATATAGTAAGGAGATTGTGACCAAGTTTTAACTCCCAGATTTATGCTCT
GTAATATAGCATGACTTGTGATTGGTACTGTTATGTTCCTCTGTAAAATG
GATTTCCAGCTGTAAGTTTGCTAGTCAATTGACATCAAAAGAAAAACCAT
CTTTGTGTGTCAAATTTTATTATAGGAACCCTTTAAAGTAAGTACCTTTC
CTAGTTGGAAAGGAGAGCAAGCACTCGAAGTGGTAATACAAGCATACTAT
ATATTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_o17.g1 MSMg01no198_o17.g1 CHROMAT_FILE:
MSMg01no198_o17.g1 PHD_FILE: MSMg01no198_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:18 2005
         (296 letters)



>mm_chr5_79183600_79184295
          Length = 696

 Score =  532 bits (275), Expect = e-155
 Identities = 290/295 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaacttctcatcacatcttctaattaatgtaaggagggagtgtatgctccatctcttgc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 ctaacttctcatcacatcttctaattaatgtaaggagggagtgtatgctccatcccttgc 260

                                                                       
Query: 61  agtttcccactggtatttagagagagaaacagtcctgatgggtctcacctaatagtactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtttcccactggtatttagagagagaaacagtcctgatgggtctcacctaatagtactt 320

                                                                       
Query: 121 tactaagtcagtggacttttctgggtcggggctcagcttcggagaaggcactgattacag 180
            |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 321 cactaagtcagtggacttttctgggtcggggctcagcttcgaagaaggcactgattacag 380

                                                                       
Query: 181 caaaagcatgaagagttctggtgagcattcctcctatgagcatgtctaggtttaagtact 240
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 caaaagcatgaagagttctggtgagcattccttctatgagcatgtctaggtttaagtact 440

                                                                  
Query: 241 acaaagtgtagtttgaggctaaacaccctgctaaacctctgattcccacactagg 295
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 acaaagtgtagtttgaggctaaacacactgctaaacctctgattcccacactagg 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)