CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCGCGG
AATTCCACTTATACATGGCCTCTGTGCAAACTAGCCCTCTGCTGAAGCAG
TATTGCGCTGGTTGCTTTTCTCATTTGCTGGGACCAAATACCTGACAAGA
AGCAATTTAAGAAAGGAAAAGTTTATTCTAGCTCATGATTCAGGGGAAAC
CATAGTAACAGGACTTGCTCCTGGATATAGTAGGAGCCTGCACATCTGGG
CAAATTACCGAGAAAGGAGAATGCTGGCTCTCAGCTGGCCTTTTCCTTTT
GTACTTTATTATGGTTCTTAACACTAGTCCAGAGCCCATGGGATGCTACC
ACCCACATTCAGAGCAGCCCCTGCAGGAGCTAATGTTCTCTGGAAAGGCT
GAACAGATAGGCACCCCTTAAACTAAGTGGATTTGACAAGCAAACTTGAC
CATCACAAGTACCCTCTACCTTAGAAATGAACATATAAAATTCTTGTTAA
GTGTTGGCTATGTGGCCTTCAGAAATCTGACATCTGTTGAAACTGTGGAA
TATGGCGCTGGTTCACACCCACCTCCTAAGAAGCAGCTCTGGATGGTTGT
GTTCTTTCAGAGTCCAAGGCTGTGACAGCTACCAGCATCCACAGCAGGGG
GTGATAATCAGCTGCTTCCTGAACTCCCAGCTGAGCCCAGCTGGGTGTTG
TCTTC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATATACACACCATAGAAAATATA
CCCATACCACCACATCCCATACCCACACACACACACACACACACACAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGAGAGGG
AGAGAGACAGAGACAGAGACAGAGACAGAGAGACAGAGACTGAGACAGAG
GCAGAGAGAGAGACAGAGAAAAACAGAGACAGAGTAACACACACACACAG
ACACAGGGAGTCAGTTACAAATAAACTTAAAGCTTTTTGGAAAAAAAAAA
GAAATTATTGTTTTTTTGAACCCCACCCTGCAGACCTAGCTCAGTTTGTA
GTGTTTGGCTAGCATGCCCACAGCCCTAGGCTTAATCCCCATCATAGCAA
AGAGCAGGCAGAAGAGTGCATTTTTGTAATCATAGCACTTGAGAAGAAAA
AGCAGGAGGATCAGAAATCCAAGATTTTTGTCAGCCATATCTGTGAATTC
CAGATCAGAACGGGTAATATGAAATCTTATCTAAAAAAGGAAAACAAAAC
AAAACAAAACAAAACACCACCACCATCGCCATGATATCCACTAGGCTATA
GACATAAATGCACAGATAATAAACATAGGTAGAAGTATGTATTATATTTA
TGGATAAGCATGAG

Query= MSMg01no201_f23.b1 MSMg01no201_f23.b1 CHROMAT_FILE:
MSMg01no201_f23.b1 PHD_FILE: MSMg01no201_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:28 2005
         (636 letters)



>mm_chr5_39816917_39817952
          Length = 1036

 Score =  938 bits (485), Expect = 0.0
 Identities = 503/509 (98%)
 Strand = Plus / Minus

                                                                        
Query: 128  aaaccatagtaacaggacttgctcctggatatagtaggagcctgcacatctgggcaaatt 187
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 aaaccatagtaacaggacttgctcctggatatagtaggagcctgcacatctgggcaaatt 977

                                                                        
Query: 188  accgagaaaggagaatgctggctctcagctggccttttccttttgtactttattatggtt 247
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  accgagaaaggagaatgctggctctcagctggccttttccttttgtactttattatggtt 917

                                                                        
Query: 248  cttaacactagtccagagcccatgggatgctaccacccacattcagagcagcccctgcag 307
            |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  cagaacactagtccagagcccatgggatgctaccacccacattcagagcagcccctgcag 857

                                                                        
Query: 308  gagctaatgttctctggaaaggctgaacagataggcaccccttaaactaagtggatttga 367
            |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 856  gagctaatgttctctggaaaggctgaacagataggcattccttaaactaagtggatttga 797

                                                                        
Query: 368  caagcaaacttgaccatcacaagtaccctctaccttagaaatgaacatataaaattcttg 427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  caagcaaacttgaccatcacaagtaccctctaccttagaaatgaacatataaaattcttg 737

                                                                        
Query: 428  ttaagtgttggctatgtggccttcagaaatctgacatctgttgaaactgtggaatatggc 487
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  ttaagtgttggctatgtgaccttcagaaatctgacatctgttgaaactgtggaatatggc 677

                                                                        
Query: 488  gctggttcacacccacctcctaagaagcagctctggatggttgtgttctttcagagtcca 547
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  gctggttcacacccacctcctaagaagcagctctggatggttgtgttctttcagagtcca 617

                                                                        
Query: 548  aggctgtgacagctaccagcatccacagcagggggtgataatcagctgcttcctgaactc 607
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  aggctgtgacagctaccagcatccacagcagggggtgataatcagctgcttcctgaactc 557

                                         
Query: 608  ccagctgagcccagctgggtgttgtcttc 636
            ||||||||||||||||||||||| |||||
Sbjct: 556  ccagctgagcccagctgggtgttttcttc 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)