MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-201G02
Chromosome	5 (Build37)
Map Location	53,093,535 - 53,093,948
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Dhx15, Sod3, Gm447, LOC100041805, Lgi2, LOC545750, D5Ertd135e
Downstream gene	Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar
Link	Open Mouse BAC browser

Click to get alignment info.

name	Dhx15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13204 MGI:1099786
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Sod3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20657 MGI:103181
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm447 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242997 MGI:2685293
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100041805 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041805
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Lgi2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:246316 MGI:2180196
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545750 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545750
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 99 ESTs, 5 Proteins pseudo : _no_value

name	D5Ertd135e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:211006 MGI:1098791
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pi4k2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67073 MGI:1914323
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Zcchc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78796 MGI:1926046
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Anapc4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52206 MGI:1098673
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc34a2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20531 MGI:1342284
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2310045A20Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:231238 MGI:1916941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1810013D10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66278 MGI:1913528
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 107 ESTs

name	LOC100041198 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041198
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	LOC100041911 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100041911
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Rbpj (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19664 MGI:96522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Cckar (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12425 MGI:99478
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dhx15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110835722 GeneID:13204 MGI:1099786
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAH (Asp-Glu-Ala-His) box polypeptide 15 transcript_id : NM_007839.2

name	Dhx15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110835725 GeneID:13204 MGI:1099786
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DEAH (Asp-Glu-Ala-His) box polypeptide 15 transcript_id : NM_001042620.1

name	Sod3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86439990 GeneID:20657 MGI:103181
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : superoxide dismutase 3, extracellular transcript_id : NM_011435.3

name	Gm447 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56118956 GeneID:242997 MGI:2685293
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 447, (NCBI) transcript_id : NM_001007590.2

name	LOC100041805 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253914 GeneID:100041805
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041805 transcript_id : XM_001477739.1

name	Lgi2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130076 GeneID:246316 MGI:2180196
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine-rich repeat LGI family, member 2 transcript_id : NM_144945.2

name	D5Ertd135e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803314 GeneID:211006 MGI:1098791
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 5, ERATO Doi 135, expressed transcript_id : NM_172490.2

name	Pi4k2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13386343 GeneID:67073 MGI:1914323
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol 4-kinase type 2 beta transcript_id : NM_028744.1

name	Pi4k2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385441 GeneID:67073 MGI:1914323
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphatidylinositol 4-kinase type 2 beta transcript_id : NM_025951.1

name	Zcchc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370225 GeneID:78796 MGI:1926046
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, CCHC domain containing 4 transcript_id : NM_030185.2

name	Anapc4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892784 GeneID:52206 MGI:1098673
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : anaphase promoting complex subunit 4 transcript_id : NM_024213.2

name	Slc34a2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:66793410 GeneID:20531 MGI:1342284
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 34 (sodium phosphate), member 2 transcript_id : NM_011402.2

name	2310045A20Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129972 GeneID:231238 MGI:1916941
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2310045A20 gene transcript_id : NM_172710.2

name	1810013D10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94374764 GeneID:66278 MGI:1913528
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 107 ESTs product : RIKEN cDNA 1810013D10 gene transcript_id : XM_983179.1

name	LOC100041198 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253883 GeneID:100041198
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : hypothetical protein LOC100041198 transcript_id : XM_001475948.1

name	LOC100041911 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253922 GeneID:100041911
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100041911 transcript_id : XM_001478001.1

name	Rbpj (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286784 GeneID:19664 MGI:96522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : recombination signal binding protein for immunoglobulin kappa J region transcript_id : NM_001080928.1

name	Rbpj (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124301228 GeneID:19664 MGI:96522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : recombination signal binding protein for immunoglobulin kappa J region transcript_id : NM_009035.4

name	Rbpj (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124286786 GeneID:19664 MGI:96522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : recombination signal binding protein for immunoglobulin kappa J region transcript_id : NM_001080927.1

name	Cckar (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753305 GeneID:12425 MGI:99478
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cholecystokinin A receptor transcript_id : NM_009827.1

name	Dhx15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110835723 GeneID:13204 MGI:1099786
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005689 - minor (U12-dependent) spliceosome complex [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003724 - RNA helicase activity [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0008380 - RNA splicing [Evidence ISS] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 15 (RNA helicase A) product : DEAH (Asp-Glu-Ala-His) box polypeptide 15 isoform 2 protein_id : NP_031865.2

name	Dhx15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110835726 GeneID:13204 MGI:1099786
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005689 - minor (U12-dependent) spliceosome complex [Evidence ISS]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0008026 - ATP-dependent helicase activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003724 - RNA helicase activity [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0008380 - RNA splicing [Evidence ISS] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 15 (RNA helicase A) product : DEAH (Asp-Glu-Ala-His) box polypeptide 15 isoform 1 protein_id : NP_001036085.1

name	Sod3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755600 CCDS:CCDS19283.1 GeneID:20657 MGI:103181
definition	GO_component : GO:0005615 - extracellular space [Evidence IDA] GO_function : GO:0016209 - antioxidant activity [Evidence IEA]; GO:0005507 - copper ion binding [Evidence IEA]; GO:0004785 - copper, zinc superoxide dismutase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0001666 - response to hypoxia [Evidence IMP]; GO:0006801 - superoxide metabolism [Evidence IEA] codon_start : 1 product : superoxide dismutase 3, extracellular protein_id : NP_035565.1

name	Gm447 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56090511 GeneID:242997 MGI:2685293
definition	codon_start : 1 product : hypothetical protein LOC433886 protein_id : NP_001007591.1

name	LOC100041805 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253915 GeneID:100041805
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477789.1

name	Lgi2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450363 CCDS:CCDS19285.1 GeneID:246316 MGI:2180196
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : leucine-rich repeat LGI family, member 2 protein_id : NP_659194.1

name	D5Ertd135e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369676 CCDS:CCDS19286.1 GeneID:211006 MGI:1098791
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0000049 - tRNA binding [Evidence IDA] GO_process : GO:0001514 - selenocysteine incorporation [Evidence IDA] codon_start : 1 product : DNA segment, Chr 5, ERATO Doi 135, expressed protein_id : NP_766078.1

name	Pi4k2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386344 GeneID:67073 MGI:1914323
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : isoform 2 is encoded by transcript variant 2; type II phosphatidylinositol 4-kinase beta product : phosphatidylinositol 4-kinase type 2 beta isoform 2 protein_id : NP_083020.1

name	Pi4k2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385442 CCDS:CCDS19287.1 GeneID:67073 MGI:1914323
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform 1 is encoded by transcript variant 1; type II phosphatidylinositol 4-kinase beta product : phosphatidylinositol 4-kinase type 2 beta isoform 1 protein_id : NP_080227.1

name	Zcchc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124249222 GeneID:78796 MGI:1926046
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : zinc finger, CCHC domain containing 4 protein_id : NP_084461.1

name	Anapc4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956182 CCDS:CCDS19290.1 GeneID:52206 MGI:1098673
definition	GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0007067 - mitosis [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : anaphase-promoting complex subunit 4 protein_id : NP_077175.1

name	Slc34a2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:66793411 CCDS:CCDS19291.1 GeneID:20531 MGI:1342284
definition	GO_component : GO:0016324 - apical plasma membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IEA] GO_function : GO:0005386 - carrier activity [Evidence IEA]; GO:0031402 - sodium ion binding [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : type IIb Na/Picotransporter product : solute carrier family 34 (sodium phosphate), member 2 protein_id : NP_035532.2

name	2310045A20Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370028 GeneID:231238 MGI:1916941
definition	GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005529 - sugar binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC231238 protein_id : NP_766298.1

name	1810013D10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94374765 GeneID:66278 MGI:1913528
definition	codon_start : 1 product : hypothetical protein LOC66278 protein_id : XP_988273.1

name	LOC100041198 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253884 GeneID:100041198
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475998.1

name	LOC100041911 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253923 GeneID:100041911
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478051.1

name	Rbpj (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124286785 GeneID:19664 MGI:96522
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0016563 - transcriptional activator activity [Evidence ISS] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0030183 - B cell differentiation [Evidence IMP]; GO:0042742 - defense response to bacterium [Evidence IMP]; GO:0001837 - epithelial to mesenchymal transition [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0030097 - hemopoiesis [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 3 is encoded by transcript variant 3; RBP-J kappa; recombining binding protein suppressor of hairless product : recombining binding protein suppressor of hairless isoform 3 protein_id : NP_001074397.1

name	Rbpj (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94400775 CCDS:CCDS19292.1 GeneID:19664 MGI:96522
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0016563 - transcriptional activator activity [Evidence ISS] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0030183 - B cell differentiation [Evidence IMP]; GO:0042742 - defense response to bacterium [Evidence IMP]; GO:0001837 - epithelial to mesenchymal transition [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0030097 - hemopoiesis [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; RBP-J kappa; recombining binding protein suppressor of hairless product : recombining binding protein suppressor of hairless isoform 1 protein_id : NP_033061.3

name	Rbpj (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124286787 GeneID:19664 MGI:96522
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0016563 - transcriptional activator activity [Evidence ISS] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0030183 - B cell differentiation [Evidence IMP]; GO:0042742 - defense response to bacterium [Evidence IMP]; GO:0001837 - epithelial to mesenchymal transition [Evidence IMP]; GO:0007507 - heart development [Evidence IMP]; GO:0030097 - hemopoiesis [Evidence IMP]; GO:0007219 - Notch signaling pathway [Evidence IMP]; GO:0008284 - positive regulation of cell proliferation [Evidence IGI]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; RBP-J kappa; recombining binding protein suppressor of hairless product : recombining binding protein suppressor of hairless isoform 2 protein_id : NP_001074396.1

name	Cckar (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753306 CCDS:CCDS19293.1 GeneID:12425 MGI:99478
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004951 - cholecystokinin receptor activity [Evidence IEA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007409 - axonogenesis [Evidence IMP]; GO:0030900 - forebrain development [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0001764 - neuron migration [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : cholecystokinin A receptor protein_id : NP_033957.1

name	LOC545750 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253919 GeneID:545750
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 mRNAs, 99 ESTs, 5 Proteins product : similar to solute carrier family 35, member A4 pseudo : _no_value transcript_id : XR_033380.1

clone name	MSMg01-520N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-047H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-049N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-447D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-408H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-096A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-154K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-086B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-269H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-193G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165E08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-113F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170P11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-419D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-302A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-064J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-067C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-131L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-309G04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-055D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-185P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391P02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-484M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-199L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-091L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-500L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-212F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-262P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-234F01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-485G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-290G20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-335P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-195J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-475I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-201G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-539G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-525G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446P22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144E16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-390C15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-318P17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-142N16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-080E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538H03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423D14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291L17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-486M14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478N23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424D21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-062L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-313C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-317M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166P01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330J14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261N03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227P12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-280D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090K16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316O21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-174P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-221G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-011K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200K13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-084G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-281K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067L13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-134K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335B02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057M08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-200M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086C01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239K20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-142F05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-138E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094N17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057P11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281C10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106I13
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-201G02.T7 (MSMg01no201_g02.b1)	MSMg01-201G02.TJ (MSMg01no201_g02.g1)
ACC	AG386965	AG386966
length	1,170	1,202
length of high quality (start - end)	34 (36 - 69)	414 (89 - 502)
definition	CHROMAT_FILE: MSMg01no201_g02.b1 PHD_FILE: MSMg01no201_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:29 2005	CHROMAT_FILE: MSMg01no201_g02.g1 PHD_FILE: MSMg01no201_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:29 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	GGTATTGGGNNCCCATTGGGCGCTAAGACTACTAAGGGAGAGGATCCGCG GAATTCACTATTGTAANNNAGCCGATTAGTTCCCTTGNGGNNANNGNNNA GNTTNNGNTNNNCCTTTAAAAAGANNANNGGNANGNGNNANNANGNGNGG NNNNNANNNNAGNAGGNNNGAAGNGNNGGGNAAAAGNGNNAGGGAGNAGG NNGGNAGAAAGNNAGAANAGNNNGGAANAGGAGGAAANGGNNNNAGGGNA GAGNGANNGAANGNNGGGNGNGNAGGAGAANNNGGNNNNNANAAAGNAAA ANAAAAAANAGNNNGGNAGAAANAGANNNNAATTGGNNNNNNANNAAANN NGGAAGAGNAGNNAAGNNNNNNNNNNNGGNNNANAAAANNNNNNGGGNAA GAGTTTTTTTNAGAAGGGNGGGAGGAAANAGGAANNAGNNGNGAAAGAGA NNGNNNNTTTTAGANANGGANAANGGAANNNNGAGANAAAGAGAAAAAGA AAAAAGGAGAGNNGNANAGAAGGNGGANNGAAGGNGNNNNNNGAGANNNN AGNNNANNNGNANNNANANNANNNNNNNNNGGGNGAGNNNNNNNAGAAAN ANNAGGGGANNNANNAAANGGAGAAAAAGGNGGNAGGNNAGAGGAAGGNA GAAAAAAAAAGAAGAGGAAGAAAAGAGAGAGAGGAAAAAAGGAGAGAAAG GAAGAAAAAGAAAAAAGAGGAGAAAAGGAAAGAGGAAAAAAAGNAGAAAA AAGGAAAAGAAGGAAAAAGGGAAAAAAAAATTTTTTTGAAAAAGGGGAAA GGGAAAAGGGGAAAAGGAAAGAGAGAAGAAAAAGAGAAAAGAGGAAAAAG AGAAGAAAAGAAAAGAGAAGAAAAAAAGAAGAGGAAAGGANGAAAAAGAA AAGAGAGAAAAAAGGAGAAAGAAAAGAAGAGAGGAGAAAAAAAGAGAGAA AAGAAAAGAAGNGAAAAGGAGGAAGAAGAAGAGAAAAAAAGGAAAAAGAA AAGAAAAAGGAAAAGGAAAGGAAAAGGAAAGGAGGAAGGAAGAGAAGGAG GAAAAAGAGGAAGAGAGAAGAAGAGAAAGAGAAAAAAAAAAAAAAAGAGA AAAGAAAAAAAAAGGGAAGAAAAAAAAGAGAAAAAAAGGAAAAAAAAAAA AAGAGAAAGAAGGAAAAAAA	CCAGTTATTTNNNNTAAGATGGNAXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATCTATTACCTGTGTCCC AAAAGGTCTCATTACCTTGCTGCTGATCACCAAGCATGAGGCCTGCCCAT CTGCCTATTAAATACTCCTTTAGAAAGGGAATGTTTGCCAGGGTCCTCTT ATGTTTGCTATTCTCGATGTGTTAGTTTTATTATAAGTATCAAACTTGAA TGATATCGCTCTCATTGGGTATCTGAATATTACTGGGATATTCCACTTAT TAATATATAACATCACTGATTCCCTTATTTTGTTCTTAATGTTCCTTCCA AACGTTTCTGTGTCCATGAATTTAAAGGTTGAAGAGGTACGGCTCAAATA TTTGTCAAGTGTGCCCATAACATTCTGGCCCGCAAAGCTTGCTGTTACAT TTGGTATTGCTGTTTTACTCACACAATTATAAACTATATTGGGGGGAGGT CTGNGTTCCTGTTATGCTGCCTTCTACTTCCTCCTGTTTAGTTCATGTGT GTTGTTTTCTATTCATTCTTGACTTTTGTTCTCTCTGTTTTTTTTGTTGC TGCCCTTGCTTTTTCTTTTATTTCTTCCTCATTTCATTTTTTTTTTATTC CTTCTTCTTTTTTTTTTTTTTTTCTTTTTCTTTTCTTCTTTTCTTTCTCT TTTCTTTTTCTTTTCTCTTTTTTTTCCTTTTCTTTTATTTTTACTCCTTT TTTCTCTTATCTCTCTCTTTTTTTTTTTTTTTCTTTTTTTTCTTTTTCTT TTCCTTTCTTTCTTTTTCTTTTCTTTTTTTTCTTTCCTCCTTCTTCTACT TTCTTTTTTCTTTCTTTTTTTTTTTTCTTTATTCTTCCTCCTTTTCTTTT CTCTTTTTTCTTTTCTTTATCTCTCTTCTCCTTCTTCTTTTTTTTTCTTT TACTTTTTCTTCTTTTCTTTTTTTTTTTTTTATTTCTTTCTCTTTCTTTT CTTTTTTTTCCTTCTTTCCTTCCTTCTTATTCCTCCTTTCTATCTTTTTT CTTTTTCTTCTTTACTTCTTTTTTTTCTTTCCTCCTTTTTTGTTCTTCTC TTCTATCCTCTTTTCTTTCTTTTCCTTTCTTTCTTCTTTTTCTTTTTTCT TCTCTTCTCTCTCTTTCTTATCTTATTTTTTTTATCTTTCTCTCTTTTTC TT
quality values	Open. Hide. 10 10 10 9 10 10 10 13 3 0 0 3 6 6 7 9 7 7 8 10 12 13 8 8 10 8 8 15 10 11 9 8 8 8 8 19 21 37 34 34 34 33 33 28 33 33 36 32 43 44 43 50 50 36 53 36 33 31 31 31 31 30 33 21 21 3 0 0 0 3 6 6 6 6 6 6 6 6 8 7 8 11 11 11 11 9 3 0 3 3 0 0 3 0 0 3 0 0 0 3 3 0 3 3 0 0 3 0 3 0 0 0 3 9 9 15 12 12 17 17 11 9 9 3 0 0 3 0 0 3 3 0 3 0 3 0 3 0 0 3 0 0 3 0 3 0 3 0 3 3 0 0 0 0 0 3 0 0 0 0 3 3 0 3 7 3 0 0 0 3 7 7 3 0 3 0 0 3 27 3 0 3 29 18 9 3 0 3 0 0 3 7 7 7 10 3 0 3 15 3 0 0 3 3 0 3 29 29 29 29 3 0 0 3 27 27 3 0 3 3 0 0 0 3 7 7 3 0 3 27 27 59 19 9 7 7 3 0 3 3 0 0 0 0 3 7 7 3 0 3 29 29 3 0 3 3 0 0 3 7 3 0 3 0 0 3 7 3 0 3 0 3 0 3 27 27 24 7 7 3 0 0 0 3 3 0 0 0 0 0 3 0 3 27 27 3 0 3 27 27 3 0 3 29 29 29 27 3 0 3 3 0 0 0 3 3 0 3 7 7 7 3 0 3 27 3 0 0 0 0 3 9 9 9 9 3 0 0 0 0 0 0 3 0 0 3 27 3 0 0 0 3 27 27 44 27 27 3 0 3 3 0 0 3 7 3 0 0 0 0 0 0 0 0 0 0 0 3 3 0 0 0 3 0 3 29 29 3 0 0 0 0 0 0 3 7 3 0 3 18 9 9 9 9 18 16 10 10 10 3 0 3 9 9 23 25 27 3 0 3 27 27 44 47 44 27 27 3 0 3 17 7 7 3 0 0 3 3 0 0 3 0 3 20 21 10 10 10 10 3 0 0 3 0 0 0 0 3 7 7 6 9 9 3 0 3 0 3 9 3 0 3 3 0 3 15 27 3 0 0 0 0 3 25 25 3 0 3 25 25 39 33 30 22 15 7 6 6 6 6 15 19 29 30 31 30 34 34 25 25 3 0 0 3 0 3 0 3 7 7 7 7 3 0 3 27 3 0 0 3 27 27 27 3 0 3 0 0 0 0 0 0 3 23 23 3 0 0 0 0 3 3 0 0 0 3 0 0 0 3 0 3 0 0 0 3 0 3 0 0 3 0 0 0 0 0 0 0 0 0 3 22 3 0 3 27 3 0 0 0 0 0 0 0 3 27 27 27 3 0 3 0 0 3 8 7 7 7 3 0 0 0 3 0 0 3 17 3 0 3 7 7 22 24 17 12 8 6 6 3 0 3 3 0 3 25 3 0 0 3 29 19 17 8 8 8 10 3 0 3 23 19 20 20 22 11 11 10 22 15 16 15 10 8 8 8 8 8 6 7 8 8 8 8 8 8 10 8 10 8 10 8 9 8 8 8 8 8 8 8 8 11 9 9 9 10 10 13 10 8 8 8 8 8 9 12 11 11 12 12 12 14 16 12 15 9 9 9 9 9 10 9 9 9 8 10 11 11 13 15 8 6 6 6 6 8 8 10 11 12 13 10 3 0 3 7 7 8 8 9 12 15 9 9 9 15 15 11 12 12 12 9 9 9 13 10 8 8 8 8 8 8 10 8 8 8 3 3 3 3 3 8 8 19 16 17 3 3 9 10 14 17 10 9 8 8 8 8 12 15 17 10 10 10 13 17 9 11 8 8 8 8 8 8 8 7 7 10 8 8 6 6 8 8 8 8 7 7 8 12 10 10 10 19 18 11 9 12 12 9 10 8 10 8 8 8 8 10 8 8 8 8 8 9 9 9 9 6 7 8 8 6 6 9 9 9 9 9 10 9 9 9 10 10 10 8 8 8 19 8 7 9 12 8 8 8 10 8 8 3 0 3 8 8 8 10 10 10 10 17 16 19 12 13 9 9 8 8 10 10 10 16 10 14 10 8 8 8 8 8 9 9 10 9 9 10 10 10 11 11 19 8 8 6 6 10 10 18 18 18 22 17 12 13 8 8 8 6 6 11 13 8 6 6 10 10 8 6 6 8 3 0 3 8 8 10 10 10 9 10 9 9 8 10 8 8 8 8 8 8 6 6 8 8 12 10 18 15 15 8 8 8 8 8 8 8 10 10 10 10 10 10 10 10 13 12 13 6 6 8 8 10 11 13 10 11 22 22 26 19 19 19 16 16 10 9 9 9 10 8 8 8 8 11 11 12 12 25 15 17 15 19 16 19 16 16 11 12 11 11 9 13 9 9 9 9 15 13 13 7 7 8 10 15 12 8 10 10 12 11 17 19 18 12 9 9 10 10 10 10 9 9 10 15 17 28 29 26 28 28 24 24 11 16 10 10 10 8 8 6 8 7 10 6 6 12 15 15 16 22 14 20 18 17 24 14 15 15 11 12 12 12 19 12 11 11 11 18 17 13 9 9 9 9 8 10 8 8 8 10 15 22 15 10 10 11 16 15 15 15 17 21 24 15 15 9 11 12 23 15 8 8 6 6 8 8 15 18 12 12	Open. Hide. 8 8 8 8 8 6 6 9 23 3 0 0 0 0 3 9 9 9 9 8 7 3 0 3 3 0 3 6 6 6 6 10 9 9 11 6 6 9 8 11 10 19 19 15 8 9 9 22 19 19 12 12 19 24 28 35 35 37 37 37 37 35 35 36 36 50 36 53 44 44 39 50 47 23 23 9 9 11 11 12 22 14 12 9 9 14 16 19 28 22 29 23 31 35 35 35 35 36 38 57 59 59 59 57 53 50 50 50 50 50 42 47 47 42 42 23 22 13 10 10 10 10 10 15 21 24 37 37 43 43 43 36 36 43 44 53 44 44 39 37 47 34 23 15 11 6 6 6 8 15 15 31 33 31 33 33 33 36 36 38 53 53 42 42 43 43 57 57 47 47 47 53 53 53 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 41 30 18 12 12 12 11 9 11 11 18 25 36 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 57 59 44 40 30 28 28 40 40 43 42 46 43 43 59 59 59 59 42 28 23 14 14 14 15 20 20 40 43 59 59 59 59 59 59 59 59 59 59 57 57 57 59 48 48 48 39 27 17 10 10 12 13 3 0 3 10 10 8 8 10 10 8 8 10 13 12 15 15 14 14 15 27 16 15 13 10 10 17 15 22 18 19 32 26 10 8 8 6 6 8 8 8 8 10 13 11 15 11 12 11 16 11 11 11 12 11 11 11 10 10 8 8 8 8 8 9 10 10 11 11 9 9 8 8 8 8 15 16 20 20 20 15 10 10 8 10 9 9 10 10 12 13 12 13 10 15 12 11 11 12 15 12 11 11 11 10 8 8 10 12 15 12 16 10 15 15 13 15 9 9 9 9 12 10 10 6 6 8 8 8 10 10 8 8 9 9 9 13 18 34 25 24 17 18 12 8 8 6 7 8 8 8 6 6 8 8 10 9 10 12 16 15 12 10 10 10 10 10 10 10 10 9 9 9 9 17 18 20 15 18 11 11 8 8 7 7 13 13 14 27 17 13 9 6 10 8 8 8 8 8 7 8 12 9 11 18 18 13 10 10 11 11 15 11 8 8 6 6 8 8 10 26 17 15 10 10 10 10 16 20 16 13 13 8 13 6 6 8 10 10 10 9 9 9 9 8 8 10 10 12 9 18 18 17 15 10 10 10 8 8 8 8 8 8 8 9 9 17 14 17 17 17 8 8 8 15 16 22 24 17 15 10 10 10 13 9 10 11 10 8 8 8 8 8 11 9 9 9 9 9 9 9 11 10 8 10 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 10 10 21 18 24 19 14 10 12 10 8 8 9 12 10 8 10 8 11 7 6 8 8 8 11 13 8 10 10 8 9 21 21 15 15 12 15 10 10 10 10 10 10 13 13 13 17 16 18 10 10 9 8 10 8 8 8 8 8 12 15 11 10 8 8 9 9 9 9 10 13 15 19 8 8 8 8 8 8 12 16 10 10 10 17 18 17 10 10 10 10 15 9 9 9 15 10 13 11 12 12 8 8 8 9 7 8 10 10 10 8 8 8 8 8 8 8 9 15 15 16 17 18 15 15 8 8 6 6 10 12 12 10 8 10 9 9 11 10 12 10 10 8 11 9 11 11 16 23 20 16 16 10 11 8 8 9 7 13 8 10 13 13 8 8 8 11 16 14 14 10 10 10 11 11 11 8 8 8 8 9 11 15 13 12 12 11 12 10 11 11 8 8 8 8 8 8 10 12 11 11 12 12 11 9 11 11 9 9 9 9 9 8 10 12 8 8 8 6 6 8 8 10 12 9 9 9 12 18 18 19 16 11 10 11 11 12 12 11 11 10 10 10 11 8 10 10 10 8 10 15 15 16 19 10 10 6 6 8 10 13 13 12 9 9 9 8 8 7 7 9 9 12 12 8 8 8 8 8 8 6 8 8 8 8 11 15 13 16 20 19 23 12 13 12 10 10 10 8 8 8 8 8 8 15 15 8 10 8 8 8 8 8 8 12 10 13 12 16 19 16 16 10 8 10 8 8 8 8 8 8 8 6 8 8 10 9 9 9 10 11 11 12 9 9 11 11 11 11 11 11 12 7 9 9 7 11 8 8 8 10 10 9 10 12 11 11 11 14 11 11 11 14 10 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no201_g02.g1 MSMg01no201_g02.g1 CHROMAT_FILE:
MSMg01no201_g02.g1 PHD_FILE: MSMg01no201_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:29 2005
         (414 letters)



>mm_chr5_53093335_53094148
          Length = 814

 Score =  731 bits (378), Expect = 0.0
 Identities = 405/414 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacctgtgtcccaaaaggtctcattaccttgctgctgatcaccaagcatgaggcctgccc 60
           ||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||   
Sbjct: 201 tacctgtgtcccaaaaggtctcattaccttggtgctgttcaccaagcatgaagcctgtgt 260

                                                                       
Query: 61  atctgcctattaaatactcctttagaaagggaatgtttgccagggtcctcttatgtttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctgcctattaaatactcctttagaaagggaatgtttgccagggtcctcttatgtttgc 320

                                                                       
Query: 121 tattctcgatgtgttagttttattataagtatcaaacttgaatgatatcgctctcattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tattctcgatgtgttagttttattataagtatcaaacttgaatgatatcgctctcattgg 380

                                                                       
Query: 181 gtatctgaatattactgggatattccacttattaatatataacatcactgattcccttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatctgaatattactgggatattccacttattaatatataacatcactgattcccttat 440

                                                                       
Query: 241 tttgttcttaatgttccttccaaacgtttctgtgtccatgaatttaaaggttgaagaggt 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 tttgttcttaatgttccttccaaacgtttctgtgtccatgattttaaaggttgaagaggt 500

                                                                       
Query: 301 acggctcaaatatttgtcaagtgtgcccataacattctggcccgcaaagcttgctgttac 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 acggctcaaatatttgtcaagtgggcccataacattctggcccgcaaagcttgctgttac 560

                                                                 
Query: 361 atttggtattgctgttttactcacacaattataaactatattggggggaggtct 414
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 561 atttggtattgctgttttactcagacaattataaactatattggggggaggtct 614


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information