BAC Information

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BAC

Clone NameMSMg01-201I20
Chromosome5 (Build37)
Map Location 9,828,141 - 9,828,874
singlet/doubletsinglet
Overlap genenone
Upstream geneAbcb1b, Abcb4, Crot, 4930420K17Rik, Dmtf1, LOC654361, 9330182L06Rik, Grm3
Downstream geneLOC100042768, LOC625446, LOC435832, LOC100041395, LOC381612, EG625586, LOC242809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201I20.T7 (MSMg01no201_i20.b1)MSMg01-201I20.TJ (MSMg01no201_i20.g1)
ACCAG387072AG387073
length1,2191,168
length of high quality
(start - end)		746 (40 - 785)484 (93 - 576)
definitionCHROMAT_FILE: MSMg01no201_i20.b1 PHD_FILE: MSMg01no201_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:50 2005CHROMAT_FILE: MSMg01no201_i20.g1 PHD_FILE: MSMg01no201_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:21:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCTTNNNNNGACAATGCGCGCTAAGACTCCTAAGGGAGAGGATCCGC
GGAATTCAATACCCACTTTCTACCATTCTGGATTGTGACTTGTTGAACGT
TATTTTGTCTAAGACTCATTCCTCTTGGATTACTGTGTCAGGCCCATGCC
ATTGAGTGCTACAGTTGATCCTGATGGCACTAAGCTGCCATCTGCAAGGC
ATCAAAGAAAGCTGTGCCCTCTTTCCTCAGAGAGCCAGTAAATCAGCCTG
TTGTCAGACACTCATTGGGAAACTCTGGACTCTGAACCTTTGCACAAGCT
GTATACTTTCCTTGCACCAAACTTCATCTCTATCATCTGAACTTAGGTCT
TAAATAACACATCCACAAAGAAACTAGCTCTCAGTCACTTTTCCAAAGTC
ACCCCATCCTATGACTGCTTACTAGTCAGTCAGTGTTTCTAATCCAGACA
CCAGACCACATACTCTTATATTCTCTTCTGAGGCAACACATTAATCAAAT
AGAGAATGTATATGATATGTTTATGCCCTAAATACCTATCACTGTACCTG
ACACTGTAGATGTATAAAATATTTTAACCTAATAATCAAATTAACTCTTT
CATGATAAAAGTATAGAATTGTATGCAGTAACCAATTTCAGTTCTGCTTA
TGCTAGGACATTTATGTTCACTGCTTAATCTCAAATGACATCACTCATAA
AGCTTAAACTATAGAAACACTTTGCCATTGTCATAGGGTTTCTTTTGCTG
TGATAAAATTCCATTTACTATAAGTAGCCTAGGAGAAGTTATTCAGTCTT
TTAACTCTCAGGTCAAAATTTATCACTGAAAGAAGTCAGGGCAAGAACTC
AGGACTGGAACCTGTAGGCAGAGGTTAAGTAAAGTACTTACTTACTGCCT
CCTTATGGCTCATCCAGTTTTTTTTTTCTTAAATTATTCCGGATAACTAC
CCAATGTTTGAACCTTCCCTTATTAGTCCCCATCCTTCTTTCTTTTTTAA
ATATCCTGCCCCATATTTTCTATATTTCCCTTTCTTCCGTAGACTTTTTT
TCTCCTGTTAATTTTTTTTTCCCCTATTATTTTTTTCCTGTTTACATTTC
TTTTTATTTTCGTGTTTTTTTTTATCTTTTCCTTTTCTTCTTTCATTTTA
TTTTCTTTTTTCCTTTTATCCATTTTTTTCTCTTTTTCCTCTTTCTCCCT
ACGCTATCTACTTTCTTCT

CCTAGTTTTTNNNNNAAGAAGTGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAATTCAATACATGAGC
AGGACAGGCATTTTTTAACTCTTTATCTTACTAGTCAGTGAGCACGCCCA
AGGGTAGGGGTTGTCTTTTTATTTTCTGGTATCTATCCAGTTTCCTCCTT
CAGTGTCTTTCTTATGTTTTCATTTTGAAAGTCCTATATTTCCCTGGCTA
AATATAATCCTAATACATTTGCAGGTATCATAAATGCATTGGTTCCCTGG
CTGTTTTCTATTGGTTTGTGATTGTTATATAGGAAGGCTATGCTTGTCTT
TTAATTTTGTATCCTGTTCCTTTACTGAAGGTATTTATCATCTGTAGGAG
TTTTCTTGTTTTGTCTTTTGAATGTATATAAGTATACCATGTGTAAATAA
TACCTTGCACTTTTCCTTTTCCATTTGTCCAATTTATTCTCTGCTCTTGG
AATACAGGCAGCAAAGCCTCAACATAAAATATGTCATGTGTAACAAGCCC
ACTGCCTTCATCATGTTAAACAGAGAAAAACCTTGAAGCAGTTTCAGTAT
CATGAGGAAACAGACTAAGATGTCTATCTCACCACTCTTGCTGGGCATAA
TGCTCCAGTTTTTATCTAGAGCTAACTCTAGCTTAAGACTCCTGAATTTC
CTTGTTTTACCCCCCTATGCTTATCTACTTATTCTTTCTTTTCCCCTTTT
GCTTGATTCCGTATATTATTCCTGTATTTTTTTTTTTTTTGTTTTTCTTG
CTTATTTCCTTTTTTCCTTTTCTAATCTTGTTTTTCTTTTTCTTCTCTGC
CTCACTTTTTACTCTGTTTTTTTTTATTATTTTGTCTTTTATCCCTTTTT
TTTTCCTTTGTTTTCCTTTCTTCTTTTCTCTTCTTTCCTTTTCCCTTTTT
CTTTTCCTTCTCCTTTTTCTTTCTCTCTTCTTTTTTTTCTCTTCTATCTT
TTCTTTTTTCTCTTTCCTCCTTTCTCTTTTCCTTTTTTTTTTCTTTTTCT
CCCCTCTCTTCCCTCTTTTTATCCTTTTATTTTTTCCTTTTCTTTTTTTT
TCTTCTTCTTTTTTCTTTTTTCTTTCTCTTTTTCTCTCCTCTCTTCTCTC
TTTTTTTCTCTCTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_i20.b1 MSMg01no201_i20.b1 CHROMAT_FILE:
MSMg01no201_i20.b1 PHD_FILE: MSMg01no201_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:21:50 2005
         (746 letters)



>mm_chr5_9827983_9829129
          Length = 1147

 Score = 1259 bits (651), Expect = 0.0
 Identities = 714/735 (97%), Gaps = 2/735 (0%)
 Strand = Plus / Minus

                                                                       
Query: 13  gaattc-aatacccactttctaccattctggattgtgacttgttgaacgttattttgtct 71
           |||||| |||||||||||||||  ||||| ||||||||||||||||||||||||||||||
Sbjct: 892 gaattcaaatacccactttctagtattctagattgtgacttgttgaacgttattttgtct 833

                                                                       
Query: 72  aagactcattcctcttggattactgtgtcaggcccatgccattgagtgctacagttgatc 131
           |||| |||||||||||||||||||||||||||   || ||||||||||||||||||||||
Sbjct: 832 aagaatcattcctcttggattactgtgtcaggaagataccattgagtgctacagttgatc 773

                                                                       
Query: 132 ctgatggcactaagctgccatctgcaaggcatcaaagaaagctgtgccctctttcctcag 191
           |||||||  ||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 772 ctgatggtgctaagctgccatctgtaaggcatcaaagaaagctgttccctctttcctcag 713

                                                                       
Query: 192 agagccagtaaatcagcctgttgtcagacactcattgggaaactctggactctgaacctt 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 agagccagtaaatcagcctgttgtcagacactcattgggaaactctggactctgaacctt 653

                                                                       
Query: 252 tgcacaagctgtatactttccttgcaccaaacttcatctctatcatctgaacttaggtct 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgcacaagctgtatactttccttgcaccaaacttcatctctatcatctgaacttaggtct 593

                                                                       
Query: 312 taaataacacatccacaaagaaactagctctcagtcacttttccaaagtcaccccatcct 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 taaataacacatccacaaagaaactagctctcagtcacttttccaaagtcaccccatcct 533

                                                                       
Query: 372 atgactgcttactagtcagtcagtgtttctaatccagacaccagaccacatactcttata 431
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 532 atgactgcttactaggcagtcagtgtttctaatctagacaccagaccacatactcttata 473

                                                                       
Query: 432 ttctcttctgaggcaacacattaatcaaatagagaatgtatatgatatgtttatgcccta 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttctcttctgaggcaacacattaatcaaatagagaatgtatatgatatgtttatgcccta 413

                                                                       
Query: 492 aatacctatcactgtacctgacactgtagatgtataaaatattttaacctaataatcaaa 551
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aatacctatcactgtacctgacactgtagatgtataaaatattttaacctaataatcaaa 353

                                                                       
Query: 552 ttaactctttcatgataaaagtatagaattgtatgcagtaaccaatttcagttctgctta 611
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 352 ttaattctttcatgataaaagtatagaattttatgcagtaaccaatttcagttctgctta 293

                                                                       
Query: 612 tgctaggacatttatgttcactgcttaatctcaaatgacatcactcataaagcttaaact 671
           |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 292 tgctaggacatttatgttcactgcctaatctcaaatgacatcactcataaaacttaaact 233

                                                                       
Query: 672 atagaaacactttgccattgtcatagggtttcttttgctgtgataaaattccatttacta 731
           |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 232 atagaaacactttgccattgccatagggtttcttttgctgtgataaaattcca-ttacta 174

                          
Query: 732 taagtagcctaggag 746
           |||||||||||||||
Sbjct: 173 taagtagcctaggag 159


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1147
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1137
Effective search space:   836832
Effective search space used:   836832
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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