BAC Information

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BAC

Clone NameMSMg01-201L05
Chromosome5 (Build37)
Map Location 144,074,337 - 144,074,675
singlet/doubletsinglet
Overlap geneE130309D02Rik
Upstream geneMmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792
Downstream geneZdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik, Pscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201L05.T7 (MSMg01no201_l05.b1)MSMg01-201L05.TJ (MSMg01no201_l05.g1)
ACCAG387155
length715798
length of high quality
(start - end)
---339 (128 - 466)
definitionCHROMAT_FILE: MSMg01no201_l05.b1 PHD_FILE: MSMg01no201_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:07 2005CHROMAT_FILE: MSMg01no201_l05.g1 PHD_FILE: MSMg01no201_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGAATCCGCGGX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXG
TCATTTTTCCGCAAAGGCATCANTACCCCCCCTCCCCCCCCCACCCCCCC
TTTTCTATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGGCCTC
TAACTCACAAAGATTTGCCATCCTTGGCCTCCCCAGATTAAAGGTGTGTG
ACACCACACCCAGCCTTAAATTAATTTTTTGATAAACAAAACAAAAAGGC
CTCATCTTCAGAATAAATGGAAAATCTATTTCTCAGGCAAAATGATTGGA
TTTTTAAAACAGTATGCGGAGGGAAGGAGAGATGGCTTAGGAGTTAAGAG
ACTTGTTCACACAAAGGACCCAATTCCAGTTCTTAGAGCACCCATATCCT
GCTCCCAAGTGCCTATAACTCCAGCTCCCGGGAATCCCTTCCCCCTGTTC
TCCTTGAATGCCTTTACCCCCATGGATGGGTCTACTCAAACAGACGCACG
GTGTCTACACACCATGAAAAGTAGAATCGTAAGAAAAACGAGTTTAGCTA
TGTAGCTTATGCCAGCCTACTGCCTGCTAATCCTTTTGCCCCAGTGTTCC
TAGTGTTGGGACCGAGCCTTGAGCCTGCACACCCAGCTGTGATAAACCTT
GTTTTTTATGCCGGTTCCGGTTCGATCTGCTCGAATGAAGTTCTCTCTCC
TGCCCCTGCCCCCTGTTCCGCTCTCTATTGAGCCCCACCAATTTCACTTG
ACTTCCTTCTCTCACCCATGGTATTTTACTCCTCCACTGTATTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_l05.g1 MSMg01no201_l05.g1 CHROMAT_FILE:
MSMg01no201_l05.g1 PHD_FILE: MSMg01no201_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:07 2005
         (339 letters)



>mm_chr5_144074191_144074929
          Length = 739

 Score =  648 bits (335), Expect = 0.0
 Identities = 338/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actctgtagaccaggctggcctctaactcacaaagatttgccatccttggcctccccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 actctgtagaccaggctggcctctaactcacaaagatttgccatccttggcctccccaga 426

                                                                       
Query: 61  ttaaaggtgtgtgacaccacacccagccttaaattaattttttgataaacaaaacaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttaaaggtgtgtgacaccacacccagccttaaattaattttttgataaacaaaacaaaaa 366

                                                                       
Query: 121 ggcctcatcttcagaataaatggaaaatctatttctcaggcaaaatgattggatttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 ggcctcatcttcagaataaatggaaaatctatttctcaggcaaaatgattggatttttaa 306

                                                                       
Query: 181 aacagtatgcggagggaaggagagatggcttaggagttaagagacttgttcacacaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aacagtatgcggagggaaggagagatggcttaggagttaagagacttgttcacacaaagg 246

                                                                       
Query: 241 acccaattccagttcttagagcacccatatcctgctcccaagtgcctataactccagctc 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 acccaaatccagttcttagagcacccatatcctgctcccaagtgcctataactccagctc 186

                                                  
Query: 301 ccgggaatcccttccccctgttctccttgaatgccttta 339
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ccgggaatcccttccccctgttctccttgaatgccttta 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space:   240900
Effective search space used:   240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)