Query= MSMg01no201_m05.b1 MSMg01no201_m05.b1 CHROMAT_FILE:
MSMg01no201_m05.b1 PHD_FILE: MSMg01no201_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:12 2005
(409 letters)
>mm_chr5_143995260_143996067
Length = 808
Score = 698 bits (361), Expect = 0.0
Identities = 395/409 (96%), Gaps = 7/409 (1%)
Strand = Plus / Plus
Query: 4 ggaattccttttctgaaaggcctgagtcccatctgtgcaatgtaaacctggagaaaagag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttttctgaaaggcctgagtcccatctgtgcaatgtaaacctggagaaaagag 263
Query: 64 tgttcctatctccctgtcagcc---gcccgagtttagcccgggcccctcattcagagacg 120
||||||||||||||||||| || | ||||||||||| |||||||||||||||||||
Sbjct: 264 tgttcctatctccctgtca-cctggg---gagtttagcccaggcccctcattcagagacg 319
Query: 121 taacccctgctagccacggggaagggaagcttttggtttaagagataggagccagctcag 180
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 taacccctgcttgccatggggaagggaagcttttggtttaagagataggagccagctcag 379
Query: 181 gtgggcacctcagtgaccaggtgaggtgagaacccgggagaaggtgccccatggcagtgc 240
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 380 gtgggcacctcagttaccaggtgaggtgagaacctgggagaaggtgccccatggcagtgc 439
Query: 241 aggccttccgaggaggagggctcaccctttctcctgagaccatgtgtgccctgcagcatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aggccttccgaggaggagggctcaccctttctcctgagaccatgtgtgccctgcagcatc 499
Query: 301 tgagagggattcgggatgcttctgtctcctgctggttgctcagcagtttattacctaggg 360
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgagagggattcgtgatgcttctgtctcctgctggttgctcagcagtttattacctaggg 559
Query: 361 ttggcgctccaaggtgcttggtgcttctgggatgaaaacgttactctct 409
|||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 560 ttggcgctccaaggtgcttggtgcttctgggaagaaaacgttactctct 608
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 808
Length adjustment: 9
Effective length of query: 400
Effective length of database: 799
Effective search space: 319600
Effective search space used: 319600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no201_m05.g1 MSMg01no201_m05.g1 CHROMAT_FILE:
MSMg01no201_m05.g1 PHD_FILE: MSMg01no201_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:13 2005
(543 letters)
>mm_chr5_144074278_144075220
Length = 943
Score = 663 bits (343), Expect = 0.0
Identities = 349/351 (99%)
Strand = Plus / Minus
Query: 1 tggcctccccagatcacaggtgtgtgacaccacacccagccttaaattaattttttgata 60
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tggcctccccagattaaaggtgtgtgacaccacacccagccttaaattaattttttgata 292
Query: 61 aacaaaacaaaaaggcctcatcttcagaataaatggaaaatctatttctcaggcaaaatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 aacaaaacaaaaaggcctcatcttcagaataaatggaaaatctatttctcaggcaaaatg 232
Query: 121 attggatttttaaaacagtatgcggagggaaggagagatggcttaggagttaagagactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 attggatttttaaaacagtatgcggagggaaggagagatggcttaggagttaagagactt 172
Query: 181 gttcacacaaaggacccaaatccagttcttagagcacccatatcctgctcccaagtgcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gttcacacaaaggacccaaatccagttcttagagcacccatatcctgctcccaagtgcct 112
Query: 241 ataactccagctcccgggaatcccttccccctgttctccttgaatgcctttacgcacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ataactccagctcccgggaatcccttccccctgttctccttgaatgcctttacgcacatg 52
Query: 301 tatgggtctactcaaacagacacacggggctacacaccatgaaaagtaaaa 351
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 tatgggtctactcaaacagacacacggggctacacaccatgaaaagtaaaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
