BAC Information

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BAC

Clone NameMSMg01-201M06
Chromosome5 (Build37)
Map Location 63,867,910 - 63,868,705
singlet/doubletsinglet
Overlap genenone
Upstream geneCentd1
Downstream gene3110047P20Rik, LOC100042133, 0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-201M06.T7 (MSMg01no201_m06.b1)MSMg01-201M06.TJ (MSMg01no201_m06.g1)
ACCAG387188AG387189
length1,2261,217
length of high quality
(start - end)		804 (53 - 856)749 (90 - 838)
definitionCHROMAT_FILE: MSMg01no201_m06.b1 PHD_FILE: MSMg01no201_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:13 2005CHROMAT_FILE: MSMg01no201_m06.g1 PHD_FILE: MSMg01no201_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATATTNNNNNNNNATCAATGCGCGCTAXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACACACAGCTACTGTGCCTTTTAATCCTTAAAAAGGAC
ATATTTGCCTTAACTACTCATCTTGTTTCTAACAGAAACAATATTCCATA
CAGCCATATAACACTGGCATTGAAAGACCACATATTCCATCTGTGTCCTC
AGTGTTTTACAATTCTTTTCTTTCTTTTTATTCAGGCTTGTTTTATGCTA
CAACATGTGATTTACTTTAGAATGAATTTCATTGGCTACTGAGAAAATAT
ACATTCTATAGCTGTTGTGGGATATTCTATAGTTTTTATTTATTTTTACA
TCCATTTATTGTATTGTATAGTTTTACTTTTAAATTTGTTTGTTGATTAT
TAGTTGAGATGATTCATCTAACAATGAAAAATGTCTTGCTTTAGATCTGA
GAAAATGTCCGCTATTATATTTTCTCATCTTACATGGTCCTATTTTGCTC
TTTTGATCCTGTCTAGAAATATTGGAAGTTGTAGTTATGATCATTTATAT
ATTTTTCCTTTTTTAATATCTGAATGCAATAATTCCTCAACAGTTTTAAC
TCTTTTATTGTTTGAGATTATAATTATATAATTCCCCCTTACTTTCTTCC
CTCTAAACCCTCCTATATACTCCTACTTGCTCAAATTCATGTTTTTTTCA
TTAAGTATTGTTACATGCATGTATGAATATGGATATGCATACGTATTTCT
AAAAAAGACCTGCTCAGTATGTAGGGAGATGCATCTGTGCAGTCCTCAGA
TTTGTAGAAAGGCAGAAAACTGAAAACAAAGACTTCAACATGTCAATCTC
TTTTGGCTCCATGGTAGTCAGACCTAGGACAGGGCATCTACCTCTGGCTC
CCCAATCCAGCACTCTATCTCTGCTTGATGAATTCCTTAAATTCCCGCCA
AACTTCCACCTTTTTAGCAATTTAAAAAAAATTCTTGACCCTTCCTATAA
AAAAAAAACCATTTTAATATGTTCAATTTTTGCTCCTCCCCCTTTTTACA
GAATTTCCCCAACCTCCCTCCACTTTTTCAGAAAACCCCCAATGTATCGC
TTTTTTATTGTGTAACACCATCACAATCAAATTTTCACAAAAACCTGTTT
TGGTTTTTTTTGCTTTAAATTAAACAAAACGTTTTCTGTGGAACACACTA
TTTTCTTCTCTTCCCTTCTCTGACCC

NCAATATTTNNNNNNTAAGATGTGTAGCTGGGGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCG
AATGGCTGAGAAGCTCCTGAAAAAAATGTTCAACATCCTTAATCATCAGG
GAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAAACCAGTCAGA
ATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGG
AAAAGGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAGC
CACTCTGGAAATCTGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTA
CCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCC
AACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTA
TAATAGCCAGAACCTGGAAAGAACCCAGATGCCCCTCAAGAGAGGAATGG
ATATATAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAA
AAACAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCA
TCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTAC
TCACTGATAAGTGGATATTAGCCCAAAACCTAGCATACCCAAGATATAAG
ATACAATTTGCTAAACACATGAAACTCAAGAAGAATGAAGACTGAAGTGT
GGACACTATGCCCCTCCTTAGAATTGGGAACAAAACACCCATGGAAGGAG
TTACAGAGACAAAGTTTGGAGCTGAGATGAAAGGATGGACCATCTAGAGA
CTGCCATATCCAGGGATCCACCCCATAATCAGCTTCCAAACGCTGACCCC
ATTGCATACACTAACCAGATTTTATCGAAAGGACCCAGAAGTAACTGTCT
ATTGGGAGTCTTTGTTGGGGCCCAACAAACCCAAAAGGGGATGCCCACCG
TCCACCATTGTGATGGAATCCAGGCTCCCCCATGGAGAAACTTAATAATG
TTCCCTAGGAGCTTAACTGATTCTGCACCCCCTTTGGTTGGACAACATTT
TTTTAATTATCCCTTACCCTCGGAAATTTTTGATTTTCTTATGCTAATTT
TTCTCTAAAATAGCCCTCTCTCTCTCCTCTCTGTCAAATAATACTCCCCT
TACTTTTTCTTTTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no201_m06.b1 MSMg01no201_m06.b1 CHROMAT_FILE:
MSMg01no201_m06.b1 PHD_FILE: MSMg01no201_m06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:13 2005
         (804 letters)



>mm_chr5_63867587_63868790
          Length = 1204

 Score = 1413 bits (731), Expect = 0.0
 Identities = 782/801 (97%), Gaps = 5/801 (0%)
 Strand = Plus / Minus

                                                                        
Query: 4    ggaattcacacacagctactgtgccttttaatccttaaaaaggacatatttgccttaact 63
            |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 1119 ggaattcacacacagctactgtg-tttttaatccttaaaaaggacatatttgccttaact 1061

                                                                        
Query: 64   actcatcttgtttctaacagaaacaatattccatacagccatataacactggcattgaaa 123
            |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 1060 actcatattgtttctaacagaaacaatattccatatagccatataacactgtcattgaaa 1001

                                                                        
Query: 124  gaccacatattccatctgtgtcctcagtgttttacaattcttttctttctttttattcag 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 gaccacatattccatctgtgtcctcagtgttttacaattcttttctttctttttattcag 941

                                                                        
Query: 184  gcttgttttatgctacaacatgtgatttactttagaatgaatttcattggctactgagaa 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  gcttgttttatgctacaacatgtgatttactttagaatgaatttcattggctactgagaa 881

                                                                        
Query: 244  aatatacattctatagctgttgtgggatattctatagtttttatttatttttacatccat 303
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 880  aatatacattctatagctgttgtggggtattctatagtttttatttatttttacatccat 821

                                                                        
Query: 304  ttattgtattgtatagttttacttttaaatttgtttgttgattattagttgagatgattc 363
            |||||||||||||    |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 820  ttattgtattgta----tttacttttaaatttgtttgttgattattaattgagatgattc 765

                                                                        
Query: 364  atctaacaatgaaaaatgtcttgctttagatctgagaaaatgtccgctattatattttct 423
            |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct: 764  atctaacaatgaaaaatgtcttgctttagatctgagaaaatgtctgctgttatgttttct 705

                                                                        
Query: 424  catcttacatggtcctattttgctcttttgatcctgtctagaaatattggaagttgtagt 483
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704  catcttatatggtcctattttgctcttttgatcctgtctagaaatattggaagttgtagt 645

                                                                        
Query: 484  tatgatcatttatatatttttccttttttaatatctgaatgcaataattcctcaacagtt 543
            ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct: 644  tatgatcatttatatatttttcctttttttatatctgaatgcaatatttcctcaacagtt 585

                                                                        
Query: 544  ttaactcttttattgtttgagattataattatataattcccccttactttcttccctcta 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584  ttaactcttttattgtttgagattataattatataattcccccttactttcttccctcta 525

                                                                        
Query: 604  aaccctcctatatactcctacttgctcaaattcatgtttttttcattaagtattgttaca 663
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524  aaccctcctatatactcctacttgctcaaattcatgtttttttcattaagtattgttaca 465

                                                                        
Query: 664  tgcatgtatgaatatggatatgcatacgtatttctaaaaaagacctgctcagtatgtagg 723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464  tgcatgtatgaatatggatatgcatacgtatttctaaaaaagacctgctcagtatgtagg 405

                                                                        
Query: 724  gagatgcatctgtgcagtcctcagatttgtagaaaggcagaaaactgaaaacaaagactt 783
            | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 404  gtgatgcatctgtgcagtcgtcagatttgtagaaaggcagaaaactgaaaacaaagactt 345

                                 
Query: 784  caacatgtcaatctcttttgg 804
            |||||||||||||||||||||
Sbjct: 344  caacatgtcaatctcttttgg 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 804
Length of database: 1204
Length adjustment: 10
Effective length of query: 794
Effective length of database: 1194
Effective search space:   948036
Effective search space used:   948036
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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