CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGTCTCTTCAGACTGCAAGATCTTGTCAGCAGAGAGTGCTTCAT
CAGTCATGTGGTGGTTCATACCTCGTTTAGTCTAGAAAGAGAGAGATCAT
GGGTCTGTAAATGACCCACAGGCTAGACACTGGAGGCTCATGGCCTCCCT
AATGAGCTTTCTGTTTAATCTCCTTGAATCTACAATAACCCTAGATAGCA
GAACCTATTTCACACATGAGGAAGAAGGTAAGAGAGGTTAGGCTGCAGAG
TCACATGGCTTTGGGAAGGAAGTACATCAATTTTGAGCTCTAGACTGATT
CCCAAGAATCTTCTGTTGAATTACCAAGGAACCATGGACAAGTCTTCTGG
GAGAATACAGGATTGAGGGAATACAGAAAGAGGAGGAAGACTCAGGTGGC
AAGGACCACATCATAAAATGCACTTAGCTAGTAGTTTTATCTTGTAGTTT
ACCGGGCACACTGGACCACTGAAACCAAGTCCTTCAATGGAGGAATGGAT
TCAGAAAATTGCTATGCACACTCCAGTGAAGTTTGCTTGGCAGGTCGAGA
GGCCTGGAAGCACTCATGAGGCAAAGAGTTTCACAGAAACTCACCTCCTG
GAGCTTTGGTGTTCTCATTAACCCATATACTCATACCCTCTCCCCGTGTT
AGTCTGGTGTATAGAT

TTCTCTTAATATTTTGTCCATTAAAAATAAAGAATAGAAAAATTCTTCCT
CTCAAATGAAACGAGTGGTCTGGTGGACGCCTGTTTCCCGAATTTAGGTG
ATACTATAGAATTTTCCGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTTTTATTAAGCCAGAGCAGATACCCATTT
AAAATATTTTACTAGTTTCCCACCCCCCCCGCCCGCTTTTGGAATCAGAT
ATATGACAAGCTGTGCTCGTCTAAAAAAAAAAAAAAAGTGTGTGGGGGGG
GGGGGCGTCACAAACGAGAAATAGGGAATATGATAAAGGAATTGCGAATA
GTTTTATTTTTTATAAGGAAAATGTTTAAGAAAAAAAAAGGTTTTTAAAA
AAGGGCTGTGTAGAAAAAATTAAGGTGAAAAACGTTGTTCGGCAACACAC
TATATTGTATTATACCCTTAAAAATAGCTTACAATAAATAAATTACGCTT
CATGATGATATTAATAATTGAATAATTTGGTCAACAAAAAAAAGTGAAAA
AAAGGAAAAATTATAAAATATTCGAAAATACAATAAAGATCCACTTTATA
TTATTGATAAAGTTTGCGAGTCTC

Query= MSMg01no202_c09.b1 MSMg01no202_c09.b1 CHROMAT_FILE:
MSMg01no202_c09.b1 PHD_FILE: MSMg01no202_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:51 2005
         (669 letters)



>mm_chr5_45817114_45818182
          Length = 1069

 Score = 1178 bits (609), Expect = 0.0
 Identities = 651/665 (97%), Gaps = 1/665 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgtctcttcagactgcaagatcttgtcagcagagagtgcttcatcagtcatgt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 974 gaattcctgtctcatcagactgcaagatcttgtcagcagagagtgcttcatcagtcatgt 915

                                                                       
Query: 65  ggtggttcatacctcgtttagtctagaaagagagagatcatgggtctgtaaatgacccac 124
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 ggtggttcatagct-gtttagtctagaaagagagagatcatgggtctgtaaatgacccac 856

                                                                       
Query: 125 aggctagacactggaggctcatggcctccctaatgagctttctgtttaatctccttgaat 184
           ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 855 aggctaggcactggaggctcatggtctccctaatgagctttctgtttaatctccttgaat 796

                                                                       
Query: 185 ctacaataaccctagatagcagaacctatttcacacatgaggaagaaggtaagagaggtt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ctacaataaccctagatagcagaacctatttcacacatgaggaagaaggtaagagaggtt 736

                                                                       
Query: 245 aggctgcagagtcacatggctttgggaaggaagtacatcaattttgagctctagactgat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aggctgcagagtcacatggctttgggaaggaagtacatcaattttgagctctagactgat 676

                                                                       
Query: 305 tcccaagaatcttctgttgaattaccaaggaaccatggacaagtcttctgggagaataca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 tcccaagaatcttctgttgaattaccaaggaaccatggacaagtcttctgggagaataca 616

                                                                       
Query: 365 ggattgagggaatacagaaagaggaggaagactcaggtggcaaggaccacatcataaaat 424
           || |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 615 ggcttgagggaatgcagaaagaggaggaagactcaggtggcaaagaccacatcataaaat 556

                                                                       
Query: 425 gcacttagctagtagttttatcttgtagtttaccgggcacactggaccactgaaaccaag 484
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 555 gcacttagctagtagttttatcttgtagtttacagggcacactggaccactgaaaccaag 496

                                                                       
Query: 485 tccttcaatggaggaatggattcagaaaattgctatgcacactccagtgaagtttgcttg 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 495 tccttcaatggaggaatggattcagaaaattgctacgcacactccagtgaagtttgcttg 436

                                                                       
Query: 545 gcaggtcgagaggcctggaagcactcatgaggcaaagagtttcacagaaactcacctcct 604
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gcaggccgagaggcctggaagcactcatgaggcaaagagtttcacagaaactcacctcct 376

                                                                       
Query: 605 ggagctttggtgttctcattaacccatatactcataccctctccccgtgttagtctggtg 664
           |||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct: 375 ggagctttggcgttctcattaacccgtatactcataccctatccccgtgttagtctggtg 316

                
Query: 665 tatag 669
           |||||
Sbjct: 315 tatag 311


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)