Query= MSMg01no202_g04.b1 MSMg01no202_g04.b1 CHROMAT_FILE:
MSMg01no202_g04.b1 PHD_FILE: MSMg01no202_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:11 2005
(286 letters)
>mm_chr5_97198160_97198845
Length = 686
Score = 522 bits (270), Expect = e-153
Identities = 276/278 (99%)
Strand = Plus / Minus
Query: 5 gaattccatctcagtgtggtgctctaaggaggcccagcccctgggtgctgtcacatagat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gaattccatctcagtgtggtgctctaaggaggcccagcccctgggtgctgtcacatagat 423
Query: 65 gtaggacacgtacagtggcacatgaaccgtcaggaacgactgggcagaatctctcacctg 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gtaggacacgtagagtggcacatgaaccgtcaggaacgactgggcagaatctctcacctg 363
Query: 125 tcatcaaaagtgtgcaagaaacaggcttacttctttcctgggaggataggagagaaaata 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcaacaaaagtgtgcaagaaacaggcttacttctttcctgggaggataggagagaaaata 303
Query: 185 atgaagtaatatccagatctgtaatggaagaaaactcatggagaagagagaacattcatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 atgaagtaatatccagatctgtaatggaagaaaactcatggagaagagagaacattcatg 243
Query: 245 ttctaggggaggaaccatcaggtttgtgccatccatcc 282
||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ttctaggggaggaaccatcaggtttgtgccatccatcc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space: 187529
Effective search space used: 187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no202_g04.g1 MSMg01no202_g04.g1 CHROMAT_FILE:
MSMg01no202_g04.g1 PHD_FILE: MSMg01no202_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:11 2005
(152 letters)
>mm_chr5_97145303_97145857
Length = 555
Score = 192 bits (99), Expect = 1e-53
Identities = 141/157 (89%), Gaps = 9/157 (5%)
Strand = Plus / Plus
Query: 1 tgtcaggttgccgattgtatcgctgcaaa-atgaaaggtctattc---ccctcttggctg 56
||||||||||||||||||||||||||||| |||||||| | | | | |||||||||
Sbjct: 201 tgtcaggttgccgattgtatcgctgcaaagatgaaagggc-aggcaggc--tcttggctg 257
Query: 57 tggtgttaggtgactgcaagtgaacagattttaaa-gccccaagcttcttgcagtgctct 115
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 258 tggtgttaggtgactgcaagtgaacagattttaaaagccctaagcttcttgcagtgctct 317
Query: 116 gccaggt-tcccacctgctggtcagtcccagcccttg 151
|||||| ||| ||||||||||||||||||||||||
Sbjct: 318 gccaggcatcctgcctgctggtcagtcccagcccttg 354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 152
Length of database: 555
Length adjustment: 8
Effective length of query: 144
Effective length of database: 547
Effective search space: 78768
Effective search space used: 78768
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
