Query= MSMg01no202_h06.b1 MSMg01no202_h06.b1 CHROMAT_FILE:
MSMg01no202_h06.b1 PHD_FILE: MSMg01no202_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:16 2005
(596 letters)
>mm_chr5_51834329_51835324
Length = 996
Score = 1137 bits (588), Expect = 0.0
Identities = 594/596 (99%)
Strand = Plus / Plus
Query: 1 aactccagagtcatgtagagcctcatcatttctatgctcccctcagagaaagcctcccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aactccagagtcatgtagagcctcatcatttctatgctcccctcagagaaagcctcccat 260
Query: 61 tgtgcaatggcctcacgccttgtgttagaaaggagttaatgcagtcacaatatgacatac 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgcaatggcctcatgccttgtgttagaaaggagttaatgcagtcacaatatgacatac 320
Query: 121 catttttattctttacctggatcagccgtagttgaacaatgtatttcaaagaactgctga 180
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 catttttattctttacctggatcagccgtagttgaacaacgtatttcaaagaactgctga 380
Query: 181 tggaggctccaactaaaccctgttctctcagataagtatcttcatcccattcattgtaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaggctccaactaaaccctgttctctcagataagtatcttcatcccattcattgtaga 440
Query: 241 aaaaaaaataccttacttcagagaggcattttcatatgctttggtttgagtcagagataa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaaaaaataccttacttcagagaggcattttcatatgctttggtttgagtcagagataa 500
Query: 301 accatgcctgctgcaaactaattaatatcagtcacctggaaagcagaaatgaggcagcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accatgcctgctgcaaactaattaatatcagtcacctggaaagcagaaatgaggcagcaa 560
Query: 361 ctggcttcttcctcgataaacagattgcagggtaagttatgctcatgaatgtgacaattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggcttcttcctcgataaacagattgcagggtaagttatgctcatgaatgtgacaattc 620
Query: 421 atttggccacagaaatagcagaaatgacacatttttcaaatagatatttggaaatcttga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttggccacagaaatagcagaaatgacacatttttcaaatagatatttggaaatcttga 680
Query: 481 gcaactatccccagacttcatccatttgaggacaagaaagtcttttgcaccacatttcaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcaactatccccagacttcatccatttgaggacaagaaagtcttttgcaccacatttcaa 740
Query: 541 gcttctttaagttgccagtatcagcataaatgtgtaggtctccgaggagaccctta 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gcttctttaagttgccagtatcagcataaatgtgtaggtctccgaggagaccctta 796
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no202_h06.g1 MSMg01no202_h06.g1 CHROMAT_FILE:
MSMg01no202_h06.g1 PHD_FILE: MSMg01no202_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:16 2005
(465 letters)
>mm_chr5_51876386_51877250
Length = 865
Score = 810 bits (419), Expect = 0.0
Identities = 456/473 (96%), Gaps = 8/473 (1%)
Strand = Plus / Minus
Query: 1 tattcagtgagagatgcccccttagtaatcttcactagaatatcctgtttaatggcatca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tattcagtgagagatgcccccttagtaatcttcactagaatatcctgtttaatggcatca 552
Query: 61 ggaaccacagagaagacaaggagttattaatgaactcctgtgaggcctctttccagctta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ggaaccacagagaagacaaggagttattaatgaactcctgtgaggcctctttccagctta 492
Query: 121 aggaagtgtttgcccagatttagctctctaaaggctgttaaaggtgggaaggggtatcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 aggaagtgtttgcccagatttagctctctaaaggctgttaaaggtgggaaggggtatcac 432
Query: 181 agaagtgccattactcttgtgaacagcataggtgatccatggaaaggagactgggctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 agaagtgccattactcttgtgaacagcataggtgatccatggaaaggagactgggctttg 372
Query: 241 agtaggctcagttgccttgggcagtcttaaggaagggaaatatttacactgcagcttgga 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 371 agtaggctcagttgccttgggcagtcttaaggaagggaaatatttacactgcagtttgga 312
Query: 301 acagggtggagcgagagaagcaagaagtccgagtcaaaggcacgcccagatgacaacgca 360
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct: 311 acagggtggagcgagagaagcaagaagtccgagtcaaagggatggtcagatgacaacgca 252
Query: 361 agttcagcattgatgaaaccaacaagagactaaagaagaaggt--------cacacctct 412
||||||||||||||||||||| ||||||||||||||||||| | |||||||||
Sbjct: 251 agttcagcattgatgaaaccagcaagagactaaagaagaagctcactcctccacacctct 192
Query: 413 tccttcctacctcacgattgccaggactgttctgtgtccttggacattcttca 465
|||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 191 tccttcctacctcacgattgccaggactgttctgtgtcctaggtcattcttca 139
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space: 389025
Effective search space used: 389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
