Query= MSMg01no202_n06.b1 MSMg01no202_n06.b1 CHROMAT_FILE:
MSMg01no202_n06.b1 PHD_FILE: MSMg01no202_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:47 2005
(607 letters)
>mm_chr5_70523106_70524111
Length = 1006
Score = 1116 bits (577), Expect = 0.0
Identities = 598/605 (98%), Gaps = 2/605 (0%)
Strand = Plus / Plus
Query: 4 ggaattcatagatgtgcttgtgtttactcatcttgggaaaagaaatatatcctggataac 63
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatagatgtggttgtgtttactcattttgggaaaagaaatatatcctggataac 263
Query: 64 ctagctttacccactcttagtcatataagctatgatgaatgcagataccctttctgtgcc 123
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctagctttacccaat-ttagtcatataagctatgatgaatgcagataccctttctgtgcc 322
Query: 124 agaaacacataaaagtaggagatagaataaaggtacgatggataaaggta-gtttaactt 182
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 323 agaaacacataaaagtaggagatagaataaaggtacgatggataaaggtaggttaaactt 382
Query: 183 caagatgctggaaggagctttgtgccaagcattggaagttgcaaaatctggaaaaggaga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 caagatgctggaaggagctttgtgccaagcattggaagttgcaaaatctggaaaaggaga 442
Query: 243 gtgacgtcccatctccagctgtcagggaacaatgcagcccattgagtatgtgattttagc 302
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gtgatgtcccatctccagctgtcagggaacaatgcagcccattgagtatgtgattttagc 502
Query: 303 aaagaaaaacctcatttagactgctgacctatagtcactgtgaaacttgtagtgtttaag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaagaaaaacctcatttagactgctgacctatagtcactgtgaaacttgtagtgtttaag 562
Query: 363 caaaatatattgcaattattctcttctaagaaaaaaatccattttaaagatacatttctc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 caaaatatattgcaattattctcttctaagaaaaaaatccattttaaagatacatttctc 622
Query: 423 acattatagtatgctatttcctagcacatttcttcttttaaaaatattctattagggatt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 acattatagtatgctatttcctagcacatttcttcttttaaaaatattctattagggatt 682
Query: 483 gagaatgacacaagtatatttttataacattcatactcatgtttcatcaattcctcccaa 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gagaatgacacaagtatatttttataacattcatactcatgtttcatcaattcctcccaa 742
Query: 543 atccatcttcactttctacacattcaagtttgtgtcctattttttaacatcactgagtct 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 atccatcttcactttctacacattcaagtttgtgtcctattttttaacatcactgagtct 802
Query: 603 ggttt 607
|||||
Sbjct: 803 ggttt 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1006
Length adjustment: 10
Effective length of query: 597
Effective length of database: 996
Effective search space: 594612
Effective search space used: 594612
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no202_n06.g1 MSMg01no202_n06.g1 CHROMAT_FILE:
MSMg01no202_n06.g1 PHD_FILE: MSMg01no202_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:47 2005
(619 letters)
>mm_chr5_70616229_70617247
Length = 1019
Score = 897 bits (464), Expect = 0.0
Identities = 510/530 (96%), Gaps = 8/530 (1%)
Strand = Plus / Minus
Query: 1 ctatcggagtgcttttgctttattagaaatttctcataaagtctcatctgaattctatca 60
|||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||
Sbjct: 522 ctatcggagtgcttttgctttattagaaatttctcataaactctcatatgaagtctatca 463
Query: 61 agcaagtttaggtactataatttgattttttaaaataagaaaaatccatttgattcattc 120
| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct: 462 atcaagtttaggtactataatttgattatttaaaataagaaaaatccatttaatttattc 403
Query: 121 ttatcatcctgatttcactactgattttatcattgttcattcttatacctttttaaactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttatcatcctgatttcactactgattttatcattgttcattcttatacctttttaaactt 343
Query: 181 tgaaattattgacttatgtttatttttattttattttctatttctaccatctagaataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgaaattattgacttatgtttatttttattttattttctatttctaccatctagaataaa 283
Query: 241 agcaaaattatgacaagtgttcagttccagaaagcagaatagggacccagtacatatgac 300
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 282 agcaaaattatgacaagtgttcagttccagaaaacagaatagggacccagtacatatggc 223
Query: 301 ctaaataagtataagaatcccagaggaaattaaaaatatatacaagtaaattattataat 360
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 222 ctaaataagtataaaaatcccaaaggaaattaaaaatatatacaagtaaattattataat 163
Query: 361 tatatataaaattctaatttttgactgtttttgtttgtttgtttgttttacaaaactttg 420
||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 162 tatatataaaattctaatttttgactgtt--------tttgtttgttttacaaaactttg 111
Query: 421 ctgtgtgattcttaaaaatgatcagtaaattttccacagatgaagccaaatgaaaagcat 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 ctgtgtggttcttaaaaatgatcagtaaattttccacagatgaagccaaatgaaaagcat 51
Query: 481 gtgactttaaggacacagaaaacatttcagacagcctcccccaaccccca 530
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 gtgactttaaggacacagaaaacatttcagacagcctcccccaaccccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space: 614481
Effective search space used: 614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
