BAC Information

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BAC

Clone NameMSMg01-202O05
Chromosome5 (Build37)
Map Location 33,787,484 - 33,787,771
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1cb, LOC634553, LOC675983, Yes1, LOC100039775, Pisd, C330019G07Rik, LOC100040141, Depdc5, Ywhah, LOC100040169, Slc5a1, Spon2, Ctbp1, Maea, 4933407H18Rik, LOC672284
Downstream gene2410018C17Rik, Slbp, Tmem129, Tacc3, Fgfr3, Letm1, LOC100040332, Whsc1, Whsc2, Gm1673, LOC100040427, Nat8l, Poln, BC023882, Mxd4, Zfyve28, EG433874, A830049F12Rik, LOC100040061, Rnf4, BC037112
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202O05.T7 (MSMg01no202_o05.b1)MSMg01-202O05.TJ (MSMg01no202_o05.g1)
ACCAG387865AG387866
length672735
length of high quality
(start - end)
290 (42 - 331)279 (77 - 355)
definitionCHROMAT_FILE: MSMg01no202_o05.b1 PHD_FILE: MSMg01no202_o05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:52 2005CHROMAT_FILE: MSMg01no202_o05.g1 PHD_FILE: MSMg01no202_o05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:23:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATCCGGAGAGGATCCGCGGAATTCCAATTATCCAAGATTGCTAG
GACTGACCCCTGTAGCCACCATCACAGGAGCCTGGTATAAGCTCCAGCCT
TACAACAAGCAGCAATTACAATTTGAAGTTTATGTACATATAACATATGT
CTGTGTACACATTTCATATAAATACACAAAAATTCTCCAGTAGCCACAGC
AAGTATTTAGAACTAGACCAACACGTTTCTTCTTAGGGAGTGTCCATCAG
ACGCTTGGGAATCATAGTATGGGTGGCGAGAAGCAGACAGACTGGTCACC
CGTGTGTGTCCTGGAGGGCACCATCCATTTCCTAGGCCACGCATACTCCA
GAAAGCTGGACTGGTATGGGTGAGAAAGGGCTACAGGCCCCAAAGGGGCT
TGTAGTCTCCCAGGAAATTCCCTTGGTCCCCAGAAGACCACTGGGCAGGG
TCATTGCTTACAGTCACAGCCTGGCCTCACCTCCGGCCTTCTTTCCCCTA
GAACCCCACAGGTGAAGGTTTGTACTCACTAGAAAAGACAGAGAGACCAG
TTCCTGACCGCTGCTGCTCACAGAACTGCTGCCCCCAGGTATGCAGTGTT
CAATCCTTGCCCTGTACCATGTGCTCTCATCCTGACTTTAACTAGCCCAA
GATAATTGCGCTTGCTGAAACA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCCCTCAGGTTGAGGGACTGACTG
AGTCCAGCCTGCTGCTACCACCACCACCACCACCATCACCATCATCGTCT
TATAAGATACCGGAGAGTAGGCAGAGATTCTGATGATTTGACTGGGAATT
TATGTATGAACGCTGAAGGTCCTGCTCCCCATTTGGTTCTTGATCGATTC
ATAAAGATGCAAGCAGCCAATGGCTGGGCAGAAGAAATGGGACTTCCAGG
TTTCCACAGGCAGGCTATGTGATGGAGGAGAAGGAAAGAAAACTTGCCAT
GCTTCTTATTTATTTACCCCCCCCCCCCCACAGAGAGAGAGCCTCCAGTC
ATGTGAGATCTTGTTTCCCACCGAACAATGAACACTTTTCTGACTGAGCC
TGGGGTATCATGCAGGAGATTATAAATGCCATTAAGCTGAGGGTGTACTT
TCGGTACTGAGCATAATATTGTGATCCCGCCACTTTTTCGAGCTCAGATT
TAGAGGCGCTTGACCTCGCCCTTTTGTGTTTTGCCCTTTTTATCTTGTTA
TAATACTCACACACGGCTGCACCTGCCATTTATTATTAATAGCCCCGCTC
ACCCTCCTCTTATCCATCGCATGAGCTCTATGCTATCTGTCCATATAAAT
CCTCTTTTTTTTTTTATTTCCTTATGCCTTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_o05.b1 MSMg01no202_o05.b1 CHROMAT_FILE:
MSMg01no202_o05.b1 PHD_FILE: MSMg01no202_o05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:52 2005
         (290 letters)



>mm_chr5_33787452_33788141
          Length = 690

 Score =  487 bits (252), Expect = e-142
 Identities = 279/288 (96%), Gaps = 2/288 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattgctaggactgacccctgtagccaccatcacaggagcctggtataagctccagcctt 60
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||  ||||||
Sbjct: 320 gattgctaggattgacccctgtagccaccatcacaggagcctggtagaagctggagcctt 261

                                                                       
Query: 61  acaacaagcagcaattacaatttgaagtttatgtacatataacatatgtctgtgtacaca 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 acaacaagcagcaattgcaatttgaagtttatgtacatataacatatgtctgtgtacaca 201

                                                                       
Query: 121 tttcatata-a-atacacaaaaattctccagtagccacagcaagtatttagaactagacc 178
           ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tttcatatatatatacacaaaaattctccagtagccacagcaagtatttagaactagacc 141

                                                                       
Query: 179 aacacgtttcttcttagggagtgtccatcagacgcttgggaatcatagtatgggtggcga 238
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 140 aacacgtttcttcttagggagtgtccatcagatgcttgggaatcatagtatgggtggcaa 81

                                                           
Query: 239 gaagcagacagactggtcacccgtgtgtgtcctggagggcaccatcca 286
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  gaagcagacagactggtcacccgtgtgtgtcctggagggcaccatcca 33


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)