BAC Information

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BAC

Clone NameMSMg01-202P21
Chromosome5 (Build37)
Map Location 48,467,728 - 48,468,014
singlet/doubletsinglet
Overlap geneSlit2
Upstream geneLOC100040865, LOC100040876
Downstream gene4933428G09Rik, Kcnip4, LOC100041668
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202P21.T7 (MSMg01no202_p21.b1)MSMg01-202P21.TJ (MSMg01no202_p21.g1)
ACCAG387936AG387937
length746744
length of high quality
(start - end)
234 (127 - 360)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no202_p21.b1 PHD_FILE: MSMg01no202_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:00 2005CHROMAT_FILE: MSMg01no202_p21.g1 PHD_FILE: MSMg01no202_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGATCTTTCCAGAACTTTTATCATGAATGGGTGTTGGATCTTGT
CAAATGCTTTTTCTGCTTCTACCCAGATGATCATGTGGTTTTTGTCTTTG
AGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTATATTAAACCA
TCCCTGCATCCCTGGAATAAAACCTACTTGGTCAGGATGGATGATTGCTT
TAATGTGTTCTTGGATTCGGTTAGCGAGAATTTTATTAAGGATTTTGCAT
TGATATTCATAAGGGAAATTAGTCTGAATTTCTCTATCTTTGTTGGATCT
TTCTGTGGTTTATTTTATCAGACCACCACCCCGGCTTCATAAAATGTGTT
GGGTAGAGTACCTTCTACTTCTATCTTGAGAAATAGTTTGTGCAGAACTG
GAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCT
GGTCCTGGGCTTTTTTTTTTGGCTGGGAGACTATTAATGACTGCTTCTAT
TTCTTTATGGGATATGGGACTGTTTAGATTGTTAACTTGATCCTGATTTA
ACTTTGGTACCTGGTATCTGTCTAGAAATTTGTCCATTTCGTCCAGGTTT
TCCAGTTTTGTTGAGTATAGTCTTTTGCACAATGATCTGATGTTGTCTTG
GATTTTCTCAGTATTGTGTTATACTGCACCCCTTTGATTTCCGATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTGCTCAACCAGGAGTGTTGCT
CAGCACTACTGTTTATGTGGCATGACTGGTACTCAGACACACTCAGTATT
AGCACTTCCTAAAATATTTTATGTCAACACTGCATGTCCCAGACAAGCAA
TGTTGATCCCATTTCAGAAACAGACTGCATAAGAACTCAAAAACAAAATG
AGCATAATGAAGTTCTGTGTTCAAGATATACTGTAAACAATTGCTGGTAT
TCTGATGATCACTAATGAATATTTTCAGCACCATGAAAAGGTACTAGATG
AAGACCCTATCTGTTTTTTTACCCCCACTCCCCCTTGAATGTAAGAATAA
AAATGGAAGTTATTTGGATACCCAAAGAGAGAAACTTGCTCTATATGCTG
TGGTAACTTAACAATTATCAATAGATTCTACTTTTGGAGTTAGAAACATA
AGACATATACACATAGCATTGCTAAACTTAATATTTCCATACCCTTTTAT
TTCGGGACATTTAGGAATGACTGTAATGAGGGAAACTGTGACATCTGTAG
GAATGATGCTCTATCAGAGGATATGATCCTTAATGAGAGGACTACAGAGA
TACGATGATCCAGGGGGGACTCATTGCATCTCATACCTGAATTAGAAAGA
CTGAAGCATTGCCTTCAAGGAAAAGGCGGGGATCTTGTTGCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_p21.g1 MSMg01no202_p21.g1 CHROMAT_FILE:
MSMg01no202_p21.g1 PHD_FILE: MSMg01no202_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:00 2005
         (287 letters)



>mm_chr5_48467528_48468214
          Length = 687

 Score =  509 bits (263), Expect = e-148
 Identities = 281/287 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattgctcaaccaggagtgttgctcagcactactgtttatgtggcatgactggtactcag 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 487 tattgctcaaccaggagtgttgctcagcactactgtttatggggcatgactggtactcag 428

                                                                       
Query: 61  acacactcagtattagcacttcctaaaatattttatgtcaacactgcatgtcccagacaa 120
           |||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||
Sbjct: 427 acacactcagtattagcacttcctaaaatattgtatgtcaacattgcttgtcccagacaa 368

                                                                       
Query: 121 gcaatgttgatcccatttcagaaacagactgcataagaactcaaaaacaaaatgagcata 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 367 gcaatgttgatcccatttcagaaacagactgcatcagaactcaaaaacaaaatgagcata 308

                                                                       
Query: 181 atgaagttctgtgttcaagatatactgtaaacaattgctggtattctgatgatcactaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atgaagttctgtgttcaagatatactgtaaacaattgctggtattctgatgatcactaat 248

                                                          
Query: 241 gaatattttcagcaccatgaaaaggtactagatgaagaccctatctg 287
           ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 247 gaatattttcagcaccatgaaaaggtactagataaagaccctatctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)