BAC Information

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BAC

Clone NameMSMg01-204A08
Chromosome5 (Build37)
Map Location 31,228,754 - 31,229,286
singlet/doubletsinglet
Overlap geneKhk
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1
Downstream geneCgref1, Abhd1, Preb, Tcf23, Slc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-204A08.T7 (MSMg01no204_a08.b1)MSMg01-204A08.TJ (MSMg01no204_a08.g1)
ACCAG388563AG388564
length743797
length of high quality
(start - end)		536 (46 - 581)192 (77 - 268)
definitionCHROMAT_FILE: MSMg01no204_a08.b1 PHD_FILE: MSMg01no204_a08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:24 2005CHROMAT_FILE: MSMg01no204_a08.g1 PHD_FILE: MSMg01no204_a08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:25:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGCTCTAAAGCCTTAACTCTACCTCTGTCTAACTTTAAGGATGG
GGAGCAAAGCTCTGCAGTGTGAACTGCACTGAGACTGACCTGCAATGTTC
AATCCTGCTTCTCTGATATCCAGGCTCTGCACGCTGCCTCTCTTGTCCCC
TGCTCCCACCTGTGACAAGACTGAGATTGCCAGCTCCCTCCTACTTCCCT
CTGCTCAGCCCTCTGCCATTCAGGGTCCCTGGAGGCCCTACTCTCTCCCT
GGTAGTCCCCCAAACTCTTCCCAAGCTGCTCTTCTGGGTTACTCTGCCCT
GGCAGTTTTGTCCTGGATGACCTCCGCCAACATTCTGTGGACTTACGATA
TGTGGTCCTTCAGACCCACCCCTCCATCCCCACTTCTACAGTCATCATCA
ACGAGGCCAGCGGCAGCCGCACCATTCTGCACGCCTACAGGTTTGTACAC
CTGTCTGCTCTGCGCTTTGCTAGCTGCTGCCTCGGCCGTCACTATACTGC
ACTCTCCAGACAGGACCTTTCTTCTCTGAGGCCCATGTGCTCCAAAGTAC
CCTTCCCACTCCCAGAGGAGATCTAGGCTATGTGTAACTCCAATCTGTGT
TTCCTTGCCCTCTCCCTGGCTCGTGTCCCTTCCCCAAACTTCCTGATGGT
TGAATTTTAGAAAAAAGAATTGGCTACACATAAACTTATCTCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAACCATTCCTTTCTCAAGTCA
CTACAGGCCCTCCTGTTCCTCATACAGGTTTCATTGGACTATCTGAGAGA
CCAGCTGTAGGCATACATTTTTTTGCAATCTACTTTAGTAAATGTTCAAC
CTCTTCTGTAGTCTGTGACCCAGCAGAGGTAGTGGAAGAGAAACGTTATT
AGGAGATGGGGGAAGTGNNNNNNNNCNNNNTTTNNNNNNNNNNNNNNNNN
TNNNNNNNNNNNNNNCNNNCNNNNNTTTTNTTTTTTTNTTTCCTTNTTNT
TTCCNTNTTTTTTTTTTTTTCCCCCCCCCCCCTCTTTTTTTCTTTTCTCT
CCTTTTTCTTTTTCTGCCCCCCCCCCCAAAAAAAAAAATAATATTTTGGA
GGTATATGTATCAAATTCACCTTACCGATATTTCACATTATCCCTTTCCT
CCTTTCTATATTATCTCCTTGCGTTACCTTCCTCTACTCTGCTCGAACTC
TCTTCAATATCCTCCGCCATTCTACATAACGCTCTCTCCTCTTCCGCACA
CCCATACCCTATCCTCATACTTTCGCGCATAGACAATATTATATACATCT
CTTTTTTCTTCATCTCTCTTTACCCCTCTTCTTTTTTTTTCCCCCTATCT
ATTTCTTTCCCTTCTCACCCATCAACACCCCCTTCGCCATATACCTCACC
AATCATCCCTTATTTATTTTTCTCCCTTTACACCACCTTCTTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no204_a08.b1 MSMg01no204_a08.b1 CHROMAT_FILE:
MSMg01no204_a08.b1 PHD_FILE: MSMg01no204_a08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:25:24 2005
         (536 letters)



>mm_chr5_31228551_31229486
          Length = 936

 Score =  977 bits (505), Expect = 0.0
 Identities = 526/533 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaggctctaaagccttaactctacctctgtctaactttaaggatggggagcaaa 63
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 204 ggaattcaggctctaaagccttaactctacctctgtctagctttaaggatggggagcaaa 263

                                                                       
Query: 64  gctctgcagtgtgaactgcactgagactgacctgcaatgttcaatcctgcttctctgata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctctgcagtgtgaactgcactgagactgacctgcaatgttcaatcctgcttctctgata 323

                                                                       
Query: 124 tccaggctctgcacgctgcctctcttgtcccctgctcccacctgtgacaagactgagatt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tccaggctctgcacgctgcctctcttgtcccctgctcccacctgtgacaagactgagatt 383

                                                                       
Query: 184 gccagctccctcctacttccctctgctcagccctctgccattcagggtccctggaggccc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccagctccctcctacttccctctgctcagccctctgccattcagggtccctggaggccc 443

                                                                       
Query: 244 tactctctccctggtagtcccccaaactcttcccaagctgctcttctgggttactctgcc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tactctctccctggtagtcccccaaactcttcccaagctgctcttctgggttactctgcc 503

                                                                       
Query: 304 ctggcagttttgtcctggatgacctccgccaacattctgtggacttacgatatgtggtcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctggcagttttgtcctggatgacctccgccaacattctgtggacttacgatatgtggtcc 563

                                                                       
Query: 364 ttcagacccacccctccatccccacttctacagtcatcatcaacgaggccagcggcagcc 423
           |||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttcagaccgagggctccatccccacttctacagtcatcatcaacgaggccagcggcagcc 623

                                                                       
Query: 424 gcaccattctgcacgcctacaggtttgtacacctgtctgctctgcgctttgctagctgct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcaccattctgcacgcctacaggtttgtacacctgtctgctctgcgctttgctagctgct 683

                                                                
Query: 484 gcctcggccgtcactatactgcactctccagacaggacctttcttctctgagg 536
           ||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 684 gcctcggccatcactatactgcactctccagacaggacccttcttctctgagg 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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