BAC Information

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BAC

Clone NameMSMg01-205B18
Chromosome5 (Build37)
Map Location 98,584,909 - 98,585,198
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040598, EG433923, EG666293, C80008, Gk2, Antxr2, EG435856, LOC666315, LOC666320, LOC666326
Downstream genePrdm8, Fgf5, 1700007G11Rik, Bmp3, Prkg2, LOC100041680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205B18.T7 (MSMg01no205_b18.b1)MSMg01-205B18.TJ (MSMg01no205_b18.g1)
ACCAG389217AG389218
length852748
length of high quality
(start - end)
---290 (77 - 366)
definitionCHROMAT_FILE: MSMg01no205_b18.b1 PHD_FILE: MSMg01no205_b18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:54 2005CHROMAT_FILE: MSMg01no205_b18.g1 PHD_FILE: MSMg01no205_b18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:54 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ACAAAAAAAACACGGATNGCGCACCTACCTTCCCAACACGAGACGCGAAA
CCCTAAAAATTGCGGCCGCTAAANGAATCANAATTCGGAAAANGNNNGNG
GANNNNNNNNNTTACCAAAAAAGAGGGAGNNGAGAAGNANNNNGAAAAAA
AAAAAGGNNAANANNNNNNATTTTCCCCCGAAAAGAAGAAGGAAAAGAAN
NNNGGAGANNNNANNNNNANANNAGNNNAGAANGGGNNAAGAANAAAAAN
NNANGGNGANAGNAGAAGGNGGGNNGAGGANGNNGGNNGAAAGNGAGAAN
ANNNNNNNNNANNGNNNGATATTTTATTGAAAGNNTGGTNGNAATNAATG
GAAGGGAAAGTAAGGAATGGTATGAANAGGAAAGAAAAGAGGGGAAATAG
TTTTTTTTTTGAGNGAGAAAAGAAAGAAGGGGAAAAGGGGAAGAAAGAAT
AGAAGCCCCCCCCACACCCGGAAGAAGGAGACAGGAAACCACGAGGGACA
GAGGGGCCCCACAAAAAAAAAAACAAAAGCGGGGGGAGGGGGGAGANGCC
CAACAACAAAGGAAGGGGAAACAGAAAAACGCGAGAAAGGAACAGAAAGG
AAGGAAAAGCACGGAAAAGCAACCAAGAACAAACGGAAAACCGGAAGACA
AGGGGACGAAACAGCAAAGAACAGGACAACGCGGGCGAGGGACACGAACG
GGGCCAGGAAGAGCAGAAGGAACGAAGGCAACAAGAAAAAAAGGAAAAGA
AGGCAAAAAAACGAAAAAACAAACTGCAATACAAAGGGCGACAGAGAGGA
GGAAAGGAAAAACAGGAAGAAGAAACAGAGGGGAGGAAAAACAAGAAAAG
GA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCCCACAGAAAGTCAAAAACTTA
TTGAAAATATTATACGATATTTTTGCCAACTCCCTTGCATGATTCTCCAG
TGTTAACTTTGTAGACCACACCTTTCATTACAATGTCAAATGCTTGGCCA
GAAGGAGTAGGTCAGTAAGAAAGTGGGAGACCAGAACTCAGAGCAGGGGA
CAGTACTCAACATGTTGGTGACTCCTCAAGCTTGGAAGGATTTTGAAATG
GCTTTACTTATTTGTGTGTATATGTCTCTGTGAATGTATAAAGTCATTTA
CACATTCTTTTGGGTGCTATTGTGCACCCCTGTACAAACAAAGAGGCCAA
AGACTGTTGGATCCCAAACCACCCTTTGGATGTGCTAAGTAGGCTTTTTT
TTTTCTTTTTCATCTTGATGTAAGGCAGAGTCAGATGTCAAGAATATACC
CCTGCTCTTACCAGATTGCCTCCAGACACTCTCTGACTGTCGCCATATGC
AACATTTCTCATTCCATTGCGCCCTTTTCTACCCCTTTTCCTTCTTTCCT
CGCCCTTTTTTTTATCCCCGCCCCTTTTTCTTTTTCCTCCCCTTTCCTTT
TTTCCCCCCCCCCCTTTTCCCCTTTTCTTTTTTCCCCCCTTCCCCTTTTC
TCTCTCCCCCTTTTCTTTTCCCCCTTCTCCTTTTCCTATTTTCCCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_b18.g1 MSMg01no205_b18.g1 CHROMAT_FILE:
MSMg01no205_b18.g1 PHD_FILE: MSMg01no205_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:54 2005
         (290 letters)



>mm_chr5_98584585_98585274
          Length = 690

 Score =  514 bits (266), Expect = e-150
 Identities = 284/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcccacagaaagtcaaaaacttattgaaaatattatacgatatttttgccaactccctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 614 agcccacagaaagtcaaaaacttattgaaaatattatacgatatttttgataactccctt 555

                                                                       
Query: 61  gcatgattctccagtgttaactttgtagaccacacctttcattacaatgtcaaatgcttg 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gcatgattctccaatgttaactttgtagaccacacctttcattacaatgtcaaatgcttg 495

                                                                       
Query: 121 gccagaaggagtaggtcagtaagaaagtgggagaccagaactcagagcaggggacagtac 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gccagaaggagtagatcagtaagaaagtgggagaccagaactcagagcaggggacagtac 435

                                                                       
Query: 181 tcaacatgttggtgactcctcaagcttggaaggattttgaaatggctttacttatttgtg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 434 tcaacatgttggtgactcctcaagcttggaaggattttgaaatgactttacttatttgtg 375

                                                             
Query: 241 tgtatatgtctctgtgaatgtataaagtcatttacacattcttttgggtg 290
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgtatatgtcactgtgaatgtataaagtcatttacacattcttttgggtg 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)