BAC Information

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BAC

Clone NameMSMg01-206M16
Chromosome5 (Build37)
Map Location 73,106,303 - 73,106,537
singlet/doubletsinglet
Overlap geneTxk
Upstream geneGabrb1, LOC666545, Commd8, Atp10d, Corin, Nfxl1, Zar1, EG545758, Cnga1, LOC384275, Npal1
Downstream geneTec, Slain2, Slc10a4, LOC667127, Fryl, Ociad1, Ociad2, LOC667154, LOC100042205, C130090K23Rik, LOC627733, Dcun1d4, BC031901, Sgcb, Spata18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206M16.T7 (MSMg01no206_m16.b1)MSMg01-206M16.TJ (MSMg01no206_m16.g1)
ACCAG390270
length739812
length of high quality
(start - end)
---238 (181 - 418)
definitionCHROMAT_FILE: MSMg01no206_m16.b1 PHD_FILE: MSMg01no206_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:05 2005CHROMAT_FILE: MSMg01no206_m16.g1 PHD_FILE: MSMg01no206_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:29:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATCCAGCGCTCTCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
TATGTTCTTTTCCCCTTTTGTCCGCCTTCCTTTTCCTCCTTTCTCCCTTT
CCTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTCTCGCGAAAATCACCCCATATGTGTACACAGA
TGTCCCAGGATATGTTCTGGGTGTATACCACCAGTGTCAGAGAAAAGGCA
ATTTGGTTTGGTTTGGTTTGGTTTGGGTCAATACACAACTTTTCACGAAT
GAAATCTTCAAAAGAAAGTTACAGTGGGGTGGTGCCAAGTTCTGTGATGC
TGAGCTAAAGACTCCCCCTCCCCAGCTCCAACTGTCCTGGAACAGACCAG
GTACAGGTTGAAGACCAGAGGTGTGTCATTGTGGTAGAAATTTCTGAGAC
GCCCTTGTCTTTCCGTTTTTGATATGCCCGCCTCCCCAGAGATGAGCATA
TGATAGTCAAGGATAGGGTTCCCCACCCTTTAATATTTATGCCCTAGTGT
AAGATTGAAACCCTTGGTTCTGTATAACTTTTGTGCTTTCTCAACACAAT
AATCAAGGAGGATGAGGCGCTCCATATTAATTTCCTGTTGTAACCTTCTT
ATCCAAAGATCATATTATTGAGGAGCCAAGGATAGCAGTTCTCCCATTTA
TAGAGATCTGAATCTGTATTTCCCTTCGTCTTTCTTGTATATTTTTTGTA
TAATATATATTATTTATATTTCTCTTGATTATTCACCGTTTTTCGTACTT
TCTTTTTACCTCGTTACTATTTACTTATATTTGACATCTTTTTGTTTTTT
TTCCCTCGGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_m16.g1 MSMg01no206_m16.g1 CHROMAT_FILE:
MSMg01no206_m16.g1 PHD_FILE: MSMg01no206_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:29:05 2005
         (238 letters)



>mm_chr5_73106103_73106740
          Length = 638

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagtgtcagagaaaaggcaatttggtttggtttggtttggtttgggtcaatacacaact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccagtgtcagagaaaaggcaatttggtttggtttggtttggtttgggtcaatacacaact 260

                                                                       
Query: 61  tttcacgaatgaaatcttcaaaagaaagttacagtggggtggtgccaagttctgtgatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcacgaatgaaatcttcaaaagaaagttacagtggggtggtgccaagttctgtgatgc 320

                                                                       
Query: 121 tgagctaaagactccccctccccagctccaactgtcctggaacagaccaggtacaggttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagctaaagactccccctccccagctccaactgtcctggaacagaccaggtacaggttg 380

                                                                  
Query: 181 aagaccagaggtgtgtcattgtggtagaaatttctgagacgcccttgtctttccg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaccagaggtgtgtcattgtggtagaaatttctgagacgcccttgtctttccg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 638
Length adjustment: 9
Effective length of query: 229
Effective length of database: 629
Effective search space:   144041
Effective search space used:   144041
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)