Query= MSMg01no207_h11.b1 MSMg01no207_h11.b1 CHROMAT_FILE:
MSMg01no207_h11.b1 PHD_FILE: MSMg01no207_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:26 2005
(269 letters)
>mm_chr5_124041013_124041682
Length = 670
Score = 476 bits (246), Expect = e-139
Identities = 264/274 (96%), Gaps = 9/274 (3%)
Strand = Plus / Plus
Query: 1 aaacacagagcttcatgcactccaggctggcctagagtttgctaggtggcccct----at 56
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 aaacacagagcttcatgcactccaggctggcctagagtttgctaggtggc----ggggat 256
Query: 57 atgggctacggatgccacacccagccctacacagcatatgccaggctttcagtaaacatc 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atgggctacggatgccacacccagccctacacagcatatgccaggctttcagtaaacatc 316
Query: 117 ccctgattgatgctcccaacattagcatctcaggggtcagcgtcgagaacttgcagcagt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccctgattgatgctcccaacattagcatctcaggggtcagcgtcgagaacttgcagcagt 376
Query: 177 caagaaagcagctac-tgtgctctgcagagcgcctgtgcctcaacacatacccagcaaag 235
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caagaaagcagctacctgttctctgcagagcgcctgtgcctcaacacatacccagcaaag 436
Query: 236 acacttgtcatccataaaacacagcgggtacaga 269
||||||||||||||||||||||||||||||||||
Sbjct: 437 acacttgtcatccataaaacacagcgggtacaga 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 670
Length adjustment: 9
Effective length of query: 260
Effective length of database: 661
Effective search space: 171860
Effective search space used: 171860
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no207_h11.g1 MSMg01no207_h11.g1 CHROMAT_FILE:
MSMg01no207_h11.g1 PHD_FILE: MSMg01no207_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:26 2005
(387 letters)
>mm_chr5_124200692_124201478
Length = 787
Score = 627 bits (324), Expect = 0.0
Identities = 369/388 (95%), Gaps = 8/388 (2%)
Strand = Plus / Minus
Query: 1 cattaagaatccacatggttggcgggtgtggtggtacacacctttaaatcccagccccca 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||
Sbjct: 731 cattaagaatccacatggttggcgggtgtggtggtgcacacctttaaatcccagcactca 672
Query: 61 gtaggcagaggctgacaaatctctttgagtttgaagccagcctggtctaccccc----ct 116
|||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct: 671 gtaggcagaggctgacaaatctctgtgagtttgaagccagcctggtcta----caaagct 616
Query: 117 aaagctatataaagaaactcaaaacacaaaatttaaaaattaaaaaaagaagcaacaaag 176
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 615 aaggctatataaagaaactcaagacacaaaatttaaaaattaaaaaaagaagcaacaaag 556
Query: 177 ttgaagaacgaactgcatgaatgttatcctctgacctatgaatgtacacacacaataaat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttgaagaacgaactgcatgaatgttatcctctgacctatgaatgtacacacacaataaat 496
Query: 237 gtaaagaaaatatatgtatacatgtaggagcataatgtagacaggcatcgtggcaaacac 296
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gtaaagaaaatatacgtatacatgtaggagcataatgtagacaggcatcgtggcaaacac 436
Query: 297 ccataatctcagcataccaaaggcaaagacagaaggattatttcaaatttggggaacctt 356
||||||||||||||| |||||||| |||||||||| || |||||||||||||||||||||
Sbjct: 435 ccataatctcagcatgccaaaggcgaagacagaagaataatttcaaatttggggaacctt 376
Query: 357 ggtctggtccaagcttgtattgcaagat 384
||||||||||||||||||||||||||||
Sbjct: 375 ggtctggtccaagcttgtattgcaagat 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
