BAC Information

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BAC

Clone NameMSMg01-207I16
Chromosome5 (Build37)
Map Location 84,055,444 - 84,055,831
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039434, Srd5a2l2
Downstream geneLOC100039608, LOC231368, Epha5, LOC100039489
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207I16.T7 (MSMg01no207_i16.b1)MSMg01-207I16.TJ (MSMg01no207_i16.g1)
ACCAG390736AG390737
length1,2551,246
length of high quality
(start - end)
426 (32 - 457)383 (80 - 462)
definitionCHROMAT_FILE: MSMg01no207_i16.b1 PHD_FILE: MSMg01no207_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:36 2005CHROMAT_FILE: MSMg01no207_i16.g1 PHD_FILE: MSMg01no207_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNGGGGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAA
TTAGCAAGATTGTAAAAGCTAATTCACTCCCTTACACAGGGATTTACCAT
CACTTAAAAAGAAGGAAGTTTCAGACCACAGGAGAAACCAGAATAGATAC
TATAGCAGAGTTACACCCATACACACGTATTTACCCTGGCCTAAGGGGAA
GGTGGACTATACAAGAGACTAAAATAGGAACTGTGGCAAGGACGCGAAGC
CCTTGACCCTGGCTTCTAAGATTAGTGAATTTTAGGTGGAGCCCTTGTTA
ATTCCAGCTGTTATCAATGTATTCTATCCTGGGTGGTTCCCGTTAGACCT
TTTGTGTTTGCATTCCTCTGTTTTATGTAAGATTCCGGTTACCTCAATTG
TACCTTGCGAATATGTCACCCAACTTCCTTATTGTCCTCTGCATAAAAAG
TCTGATGCTCTAGCTGCCCCATTACATTCAGATTCCACACAAACTCTCCT
GCGTGTGTGTCTGTCTGTCATCCATCCACGCTTTGCCCACCCGCGTCGAG
AGACCCCGTTCCACACAGACACAAGGACCCAAAAGGTCTGCGGCATCCTG
AGAGACTCTTCCAGAGCCTGAAAAATACAGAAGTGGATGCTCACAACAAA
CCATTGGACAGAGTATTGGTTTCACATGGAGGAGTTAGAGGACTGAAGGA
GCTGTTGCAGCCCCATAGGAGAAACAACAATAAACAGTACCCCCCAGAGC
TCCCTGGGACTAAACCACCAAGCAAAGAAAACACATGGTGGGACTCATGG
CTCTAGCTGGATATGTAGCACAGGATGGCCTAGTCAGTCATCAATGGGAG
AAGAGGCCCTTGTTCCTGTGAAGGTTCTATGCCCCAGTATAGTGGAATGG
CAGGACCAAGGAGGGGGAGTGGTTGGCTTTTCTTTTTCTCTTTTCCTTTT
TCTTTCTTATTTGTTATATAATCTTATACTTTTCTCCTCTTTTCTTTTCT
TCTCTCTACTTATTTTCTTTTCTTTTATTTTCTTTTTTTCTTTTATCTTT
TTCTTTTTTATTTAATTCTCTTATATCGCTTATTCTATTTCCTCTTTTTT
ATTTTTTCATATTCTTTCCTTTTATATTTATTCTTTTCTTTTTCTCTTTT
ATTTTTTTTTCTCTATTCCATCTTTTTCTTTTTTATTTTTTTTCCTTTCC
TTTCTTTTCTTTTTATTTCTTTTCATTCTTTCTATTATTTCTGTACTTAT
TCTTT
CTTTTATTNNNNAAATGATGGGATGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGGCTAGACTTTTCTGTC
CTATATTACATCTATCTATACTTGTAAAATTGTTGGGAGCTCAAATATTT
ATTTTTAAATTTTAACTATCTTGATACTTCTTTCCTGGGACCCGTATATT
TCATGTTTTCCTCTTTTAATATTTTTTCTCTTTAATCCATGACCTCTTGC
ATAATTATTTTCACTTCCCCAAGTCCCCCAGAAACACATAAAAGAATAGT
ATCTACTGAGTCCAACAACCTTACCTATATGTGCTTGTGTTTAAGGTTAA
CAATTTTTTATTTGGAAAACTATCAGGGGCTCTTCCCTGGGGGCAAAAAC
AAAACAAAACTTAACAAAACAAAACAAAACAAAACAAAACATTCTTCATC
CCTCACTAACTGTTTTTTGTACCCCCTCAGCTAGGAGTGAGACCATGATA
AAAAATCTACGTCCCACATTTCCACATTAACTAGTTTAGTTTTGCGAAGG
ACTTGTGCATACAACCACATTTTTGAGAGTTCATGGGTGCAGCATTCCTA
TAGTGTCTAGAAAACACTACCTTGTGGCTTTATACAATTTGAATTTTACA
ATCTGTCTGTTCCTCCTTAATGATATTATCAGAGCCTGTAGCATAGTCAT
TTGTACCAGGTATTCATTTTTTCTTTTGGTAGGTACCGGCACTTTAACTT
ATTCTCTGCATTTTGACCAACTTTTGGTCTTTGTAGGTAAGTTCTATCTA
CAAAAAAGGAAATAAAAACTTCTTAAATTAGGGGTGGAGATTCACATATA
TGCATGTAAAAGGACAAGTGTTCATTCTTTGGGCCTGATTGAAGGTGTCT
AAAATTAAAGAAAGAACCCCTTGTCACTTTTCCTTTTGACACAAATAAAT
TATGGAGCCTTGGTTTCAGAATTTTTAAAAAAAATCAAGATTACTACTTA
AGTGAATTCCACTCGCTTTTTTTGATATTTTTCTAAAGATGTGGTTGCTT
TTTTTGCCTTTTTTTTATAAAATCTTTAATAAGGGGATGTTTTAACAAAA
TATATCTTTTTTCTAAAAGGATTATATATAATTTTCCTTTTTAACTTTTT
CTCCGTGATTTATAATATTTAATTTTTATTATTTAAAATATATAGTGGTA
TTTATTCTTAATATTATTAAACTTTATCATTCATGTTGTTTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_i16.g1 MSMg01no207_i16.g1 CHROMAT_FILE:
MSMg01no207_i16.g1 PHD_FILE: MSMg01no207_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:37 2005
         (383 letters)



>mm_chr5_84055344_84056126
          Length = 783

 Score =  688 bits (356), Expect = 0.0
 Identities = 378/388 (97%), Gaps = 5/388 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaggctagacttttctgtcctatattacatctatctatacttgtaaaattgttgggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctcaggctagacttttctgtcctatattacatctatctatacttgtaaaattgttgggag 429

                                                                       
Query: 61  ctcaaatatttatttttaaattttaactatcttgatacttctttcctgggacccgtatat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 428 ctcaaatatttatttttaaattttaactatcttgatacttctttcctgggaaaagtatat 369

                                                                       
Query: 121 ttcatgttttcctcttttaatattttttctctttaatccatgacctcttgcataattatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 ttcatgttttcctcttttaatattttttctctttaatccatgacctcttgcataattatt 309

                                                                       
Query: 181 ttcacttccccaagtcccccagaaacacataaaagaatagtatctactgagtccaacaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ttcacttccccaagtcccccagaaacacataaaagaatagtatctactgagtccaacaac 249

                                                                       
Query: 241 cttacctatatgtgcttgtgtttaaggttaacaattttttatttggaaaactatcagggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 cttacctatatgtgcttgtgtttaaggttaacaattttttatttggaaaactatcagggg 189

                                                                       
Query: 301 ctcttccctgggggca-----aaaacaaaacaaaacttaacaaaacaaaacaaaacaaaa 355
           ||||||||||||||||     |||||||||||||||  ||||||||||||||||||||||
Sbjct: 188 ctcttccctgggggcaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaa 129

                                       
Query: 356 caaaacattcttcatccctcactaactg 383
           ||||||||||||||||||||||||||||
Sbjct: 128 caaaacattcttcatccctcactaactg 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)