BAC Information

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BAC

Clone NameMSMg01-207L14
Chromosome5 (Build37)
Map Location 15,185,295 - 15,185,649
singlet/doubletsinglet
Overlap genenone
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream geneSpeer7-ps1, 4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207L14.T7 (MSMg01no207_l14.b1)MSMg01-207L14.TJ (MSMg01no207_l14.g1)
ACCAG390856AG390857
length1,2531,269
length of high quality
(start - end)
363 (37 - 399)389 (67 - 455)
definitionCHROMAT_FILE: MSMg01no207_l14.b1 PHD_FILE: MSMg01no207_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:01 2005CHROMAT_FILE: MSMg01no207_l14.g1 PHD_FILE: MSMg01no207_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:01 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNNCCGGCACTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATT
CCCAGGTAAGAACAAGAGCCTAAAAGGCAGAGGAGAAGTGTTCATGGGTG
CACTAGCCAGTTACCTCTGGAAGAGCCCCCGCATGGATTCAGGATGCACT
TCATGCACACTGGGTGCCATGCTGGATGGCTGCGTAAAGTCATCTCTTAC
TAAGTCCTAATCAAAATGCTTCTAGAAAACTCCACACTGAGTCAGGGCTT
TCTGTTCCCAAGCAAACCACAGCACTGATCTCCATCTGTTTTTCTCTGAC
TCTTAAAACATCCTTCCAAATTGAAAAACAAAGCACAAAATCATCTTAAT
TGCCTTGCCAAAGGATTGGAAAGGAGCACCACTTTTTGTTCAGAAGACAA
CTTTTGAAAACAAAAGAGAAGCCTCAAACGGGCCATAAGCCACAAATTGA
AAATTTTTTTTTACAACCAGGCTGGCTGTCTACTGCCAGCAAAAAAAAAA
GAGGGAGAGGAGCTCTGACTCCAAAATAGTCACTTTTCCATTTTGTCAAT
GATGGCAAAAGGCCATGGGTGCTGACTAGAGGAAGGAAAGGATGTTCCAG
GAAGAAAACAGGTCTCTTTGTTGCAAGAACTGCATTCTCACTTGTATCCA
ATGCTGATAACTGGCAGCAGAAACTCTGGGAGGGTCACATCTATGTGGTG
ACACAGGAAGCTTTCTCCAGGGTCTAGCACACTCTTACCAAAGCCTCTTG
CCCAGGTTCACTATCTCAATCTAAATGCTCCCTCGCATTAAGGGAAAACA
TGGTGTAATTGTAAATGGACAGACACATTTACTTATAGCTTTGGCCATAA
CTGGACAAGGAGAAAGTCTCATCTATTTTCCACCAGGTCCCTAGCACTCT
CAAACCCTATATAAGTATGTAAGATAGGAAAATACCCACTTTCAGTGGTA
CTTGTGTGCCCCAGTTTTCCAGAAAAGGTAAAATGTTCTATTTTCTCCCA
TTGTCCTAATATGATGCCCCTTTTGGGTGGGCTCTTTTTTCCCTCATAAT
TTTGTATATTTCCTTTAATTAAAGCTTTGTTTCTTTAAGGGCCCCTTTTA
ATGTGTAAATCGTGTAAACATATTTTTTAAAAAAAAACTTTTTTCTTTTC
ATTCATAAAGGGTCCTCCCTCTGTGTGTATCTCTCACCTGGTAATTAATA
CCAATAATTTTTCTTCCTTTTATTTATTTATTTTATATTTTAATTCTTTT
TTT
NNCCTTGATTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTTGATTTTTCAAGACTTTTAACATGAAGGG
GTGTTAAATTTTATCAAATTATTTCCCACAATCTAATGAGATGATCATGT
GTTTTTTGTTTTTCAGTGGATTTCTGTATGTTGAATTATCTCTGCATTTC
TTGGATGAAGCCTGCTTGATTGTGGTAAATGATCATTTTGATGTGTTCTT
GGATTTGGTTTGCAAGAATTTTATTGAGTTTTTTTTTTGCATTGATATTC
ATAAGCAAAAATGTTCTGAAGTTCTCTTTCTTTGTTGAGTCTTTGTGTGT
TTAGGAATAAGTGCAACTGTGGCTTCATAGAACAAATTGGGTAGCGTTTT
TTCTGTTTCTATTTTGTGGGATAGTTTGAAGAGTATTGGGATTATTTTTT
TTTTTTCCCCCCCCCNAGAATTCTGCCCTCTCCCCAAAAAAAAGAGGGGT
TTTGTTTGTTTTTTNATATTTTTAATGATTGTTTCTTTTTCCTTTGTTTG
TTATTTTTTTTTTATTCTGTTATTCTGATTTTTTATTCTTTTTTTTTTTT
TTTTGTTTTTTTTTTTTATTTTTTTTTTTTTTCTTTTTATTTTTATTTTT
TTTTTTTTATTTCTTTTTTTTTTATTTTATTTTTTTTTATTTTTTTTTTT
TTTCTTTTTCTTTTTTATCTTATTTTATTTTTTTATTCTTTTTTCTCTTT
TCTTTTTTTTTTTACTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTT
TTCTTTTTTTTCTTTATTTTTTTTTTTCTTTTTTTCTTTTTTCATTTATT
TTTTTATTCATTTTTTTTTACTTTTTTATAATTTTTTTTTTTTATTTTTA
TTTTTACTTTTTTATTTTTTTTTTTTTTTTCTTTTTTATTTTTTATTAAT
TCTTTTTATTCTTTTACTTTTTCTTTTTTTTTTTCTTTTCTATTTTTTCT
AATTTTATATTTATTTTTTTGTTTATTTTTTTTTTTTTATTTTATTTTTA
TCCTATTTTTTTTTATCTATTTTTTTTTTTTCTTTTATTTTTATTTTTTC
TTTATACTCTTTATTATTTTTTCTTCTTTTTTTCTATTTTTTTTTATTTT
ATTTTATTCTTTTATTTTTTTTATATTTTCTTTATTTTTTTATCTTTTTA
TATTCTATCTTATTTTTTGTTCTTCTTTTTCATTTCCTATTACATGATTT
TCTATCTTTTTCATATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_l14.b1 MSMg01no207_l14.b1 CHROMAT_FILE:
MSMg01no207_l14.b1 PHD_FILE: MSMg01no207_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:01 2005
         (363 letters)



>mm_chr5_15185086_15185849
          Length = 764

 Score =  609 bits (315), Expect = e-179
 Identities = 345/355 (97%), Gaps = 1/355 (0%)
 Strand = Plus / Minus

                                                                       
Query: 10  gaattc-ccaggtaagaacaagagcctaaaaggcagaggagaagtgttcatgggtgcact 68
           |||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 gaattcaccaggaaagaacaagagcccaaaaggcagaggagaagtgttcatgggtgcact 505

                                                                       
Query: 69  agccagttacctctggaagagcccccgcatggattcaggatgcacttcatgcacactggg 128
           ||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||
Sbjct: 504 agccagttacctctggaagagcagctgcatggattcaggatgcacttcatgcacactggg 445

                                                                       
Query: 129 tgccatgctggatggctgcgtaaagtcatctcttactaagtcctaatcaaaatgcttcta 188
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgccatgctggatggctgtggaaagtcatctcttactaagtcctaatcaaaatgcttcta 385

                                                                       
Query: 189 gaaaactccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctcca 248
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gagaactccacactgagtcagggctttctgttcccaagcaaaccacagcactgatctcca 325

                                                                       
Query: 249 tctgtttttctctgactcttaaaacatccttccaaattgaaaaacaaagcacaaaatcat 308
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctgtttttctctgactcttaagacatccttccaaattgaaaaacaaagcacaaaatcat 265

                                                                  
Query: 309 cttaattgccttgccaaaggattggaaaggagcaccactttttgttcagaagaca 363
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttaattgccttgccaaaggattggaaaggagcaccactttttgttcagaagaca 210


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 764
Length adjustment: 9
Effective length of query: 354
Effective length of database: 755
Effective search space:   267270
Effective search space used:   267270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)