Query= MSMg01no207_p16.b1 MSMg01no207_p16.b1 CHROMAT_FILE:
MSMg01no207_p16.b1 PHD_FILE: MSMg01no207_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:37 2005
(331 letters)
>mm_chr5_106159492_106160223
Length = 732
Score = 540 bits (279), Expect = e-158
Identities = 307/317 (96%), Gaps = 3/317 (0%)
Strand = Plus / Plus
Query: 13 gagacatcgggccagttacttaacttcttgaccctgtttcctcatctgggaatatgggag 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 gagacatcgggccagttacttaacttcttgaccctgtttcctcatctgggaatatgggag 272
Query: 73 caaggtttttatagagctgttgggaaaccgctaagacctagctggtgc--aagaccgagg 130
|||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||
Sbjct: 273 caaggtttttatagagctgttgggaaaccgctaagacctagctggt-cttaagactgagg 331
Query: 131 cgcttaacactgaataggacctgaatttgcaacagtttcctcttactgtcagaatttagc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 cgcttaacactgaataggacctgaatttgcaacagtttcctcttactgtcagaatttagc 391
Query: 191 tttttaaactatatatagaataatcatagtttgttgtttctgttctgtttagaaacaaga 250
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tttttaaaatatatatagaataatcatagtttgttgtttctgttctgtttagaaacaaga 451
Query: 251 gcaacttaattaaactaacaggttgatgcctctattagtcgtctgctgtgtgatagttcc 310
|||||||||||||||||||||||||||||| | | |||| |||||||||||||||||||
Sbjct: 452 gcaacttaattaaactaacaggttgatgccacaaggagtcatctgctgtgtgatagttcc 511
Query: 311 aggtacaggggcaggca 327
|||||||||||||||||
Sbjct: 512 aggtacaggggcaggca 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 732
Length adjustment: 9
Effective length of query: 322
Effective length of database: 723
Effective search space: 232806
Effective search space used: 232806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no207_p16.g1 MSMg01no207_p16.g1 CHROMAT_FILE:
MSMg01no207_p16.g1 PHD_FILE: MSMg01no207_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:37 2005
(381 letters)
>mm_chr5_106295351_106296131
Length = 781
Score = 648 bits (335), Expect = 0.0
Identities = 365/375 (97%)
Strand = Plus / Minus
Query: 7 ctcttgcttcagcaaagaagttggttttaaaggcgcttgtaaaattcctctcccccccct 66
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct: 581 ctcttgcttcagcaaagaagttggttttaaaggcgcttgggaaattcctctccaccccct 522
Query: 67 ccgatgggagcgcttagagcgaggggttcggtagagccgccttcaaagtcttagtgggat 126
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 521 ccgatgggagcgcttagagcgaggggttcggtagagccgccttcaaagccatagtgggat 462
Query: 127 tcctgacagttggggactccatggaattgggctaaagctgctgccaccacccggacacgg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcctgacagttggggactccatggaattgggctaaagctgctgccaccacccggacacgg 402
Query: 187 aaaatctgatgagactggaaccatatgtcaaagtttccaggaaagaagcgctcaggaacc 246
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 aaaatctaatgagactggaaccatatgtcaaagtttccaggaaagaagcgctcaggaacc 342
Query: 247 tgagcagcatgaaggccggctccagggtctgtaccacagctagctgaggaaacgctcgcc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgagcagcatgaaggccggctccagggtctgtaccacagctagctgaggaaacgctcgcc 282
Query: 307 catctgacccaccgtggtggcctcgactatgtcctcagcagtagtaacgtacatggcggg 366
||||||||||||||||||||||||||| | |||||| ||||||||||| |||||||||||
Sbjct: 281 catctgacccaccgtggtggcctcgacaaggtcctcggcagtagtaacatacatggcggg 222
Query: 367 tactgcaccactcaa 381
|||||||||||||||
Sbjct: 221 tactgcaccactcaa 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space: 287184
Effective search space used: 287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
