Query= MSMg01no208_g03.b1 MSMg01no208_g03.b1 CHROMAT_FILE:
MSMg01no208_g03.b1 PHD_FILE: MSMg01no208_g03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:11 2005
(316 letters)
>mm_chr5_134255479_134256194
Length = 716
Score = 596 bits (308), Expect = e-175
Identities = 311/312 (99%)
Strand = Plus / Minus
Query: 5 gaattcatctatctctttcatgggcatccttgaatgttggagccagttctcattcaaagg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcatctatctctttcatgggcatccttgaatgttggagccagttctcattcaaagg 457
Query: 65 tccaggttgttttagaacaccaattgtccctttgcttcctgtgctcggcagggatatggg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tccaggttgttttagaacaccaattgtccctttgcttcctgtgctcggcagggatatggg 397
Query: 125 catttgagcccctcagagtcttccctttatgctccttggcatgttaaagctgcagttagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 catttgagcccctcagagtcttccctttatgctccttggcatgttaaagctgcagttagg 337
Query: 185 aagccccaggaatctgtaatcacctattagaggtgattttattcctttaacctcctccct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aagccccaggaatctgtaatcacctattagaggtgattttattcctttaacctcctccct 277
Query: 245 actcttactcggccacagtggaatgcttcaggagctaacgtaatggagatacttaggcgg 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 276 actcttactcggccacagtggaatgcttcaggagctaacgtaatggagatatttaggcgg 217
Query: 305 agtccattgcct 316
||||||||||||
Sbjct: 216 agtccattgcct 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no208_g03.g1 MSMg01no208_g03.g1 CHROMAT_FILE:
MSMg01no208_g03.g1 PHD_FILE: MSMg01no208_g03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:11 2005
(282 letters)
>mm_chr5_134179558_134180234
Length = 677
Score = 441 bits (228), Expect = e-128
Identities = 263/278 (94%), Gaps = 7/278 (2%)
Strand = Plus / Plus
Query: 6 ccagatgtctgtatttcaaagcaggaaatctaaacataataagcctctttaagttgcatg 65
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ccagatatctgtatttcaaagcaggaaatctaaacataataagcctctttaagttgcata 265
Query: 66 tagtgtgacctgggcctgtagttccatacatttggacagaagggattgatatcagaagtt 125
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 266 tagtgtgacccgggcctgtagttccatacatttggacagaagggatggatatcagaagtt 325
Query: 126 caaggactccattgggtgaattaagtaaggacagcttgaccaactagtaagaccttatct 185
||||||||| |||||||||| ||||||| |||| ||||| |||||||||||||||
Sbjct: 326 caaggactctattgggtgaactaagtaaagacaccttga------agtaagaccttatct 379
Query: 186 caaagtaaagaatgaaaaa-gggttacaactatgaatcagtggtagagtgcttgtctgaa 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caaagtaaagaatgaaaaaagggttacaactatgaatcagtggtagagtgcttgtctgaa 439
Query: 245 atctgtcagtgaagggctaagggtgtggcacagtggtg 282
||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atctgtcagtgaagggctaagggtgtggcacagtggtg 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 677
Length adjustment: 9
Effective length of query: 273
Effective length of database: 668
Effective search space: 182364
Effective search space used: 182364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
