Query= MSMg01no208_h11.b1 MSMg01no208_h11.b1 CHROMAT_FILE:
MSMg01no208_h11.b1 PHD_FILE: MSMg01no208_h11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:17 2005
(311 letters)
>mm_chr5_51980626_51981335
Length = 710
Score = 567 bits (293), Expect = e-166
Identities = 304/309 (98%), Gaps = 5/309 (1%)
Strand = Plus / Plus
Query: 5 gaattctttagttcctggacattgaaacaaccaaagatgttccaagattaggtggtactg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagttcctggacattgaaacaaccaaagatgttccaagattaggtggtactg 264
Query: 65 tgacattatgcca--agattcagatagcctcccaagcagctatttaccatctagtgttgg 122
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgacattatg--agcagattcagatagcctcccaagcagctatttaccatctagtgttgg 322
Query: 123 gtattttgacaagtggttctgcaataatggtgagccacagctgaacagtaaccccaatct 182
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gtattt-gacaagtggttctgcaataatggtgagccacagctgaacagtaaccccaatct 381
Query: 183 gatttatctggtttaggatatatggattattcttcttgggtatatttaatagaatttcca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gatttatctggtttaggatatatggattattcttcttgggtatatttaatagaatttcca 441
Query: 243 tagaggggaaatgctatttccggcagagaaattgaggcaggaaaattattctgtgccctc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tagaggggaaatgctatttccggcagagaaattgaggcaggaaaattattctgtgccctc 501
Query: 303 agctagtct 311
|||||||||
Sbjct: 502 agctagtct 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 710
Length adjustment: 9
Effective length of query: 302
Effective length of database: 701
Effective search space: 211702
Effective search space used: 211702
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no208_h11.g1 MSMg01no208_h11.g1 CHROMAT_FILE:
MSMg01no208_h11.g1 PHD_FILE: MSMg01no208_h11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:17 2005
(282 letters)
>mm_chr5_52098131_52098813
Length = 683
Score = 516 bits (267), Expect = e-151
Identities = 279/283 (98%), Gaps = 1/283 (0%)
Strand = Plus / Minus
Query: 1 ttttgtcaggaggcagaatgtaggtgaagtcaatggtgggaatgatcctttgtgatctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttttgtcaggaggcagaatgtaggtgaagtcaatggtgggaatgatcctttgtgatctca 424
Query: 61 aaaatacgtgcatatcaagatgcaaaattttaaagtaag-tttttttcccaaaggatgac 119
||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 423 aaaatacttgcatatcaagatgcaaaatttaaaagtaagttttttttcccaaaggatgac 364
Query: 120 atctctgctgtacagttgggttgcaggtgaaaaatgatcatgcaaaatatcacacacaag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 atctctgctgtacagttgggttgcaggtgaaaaatgatcatgcaaaatatcacacacaag 304
Query: 180 gcaaacggacttagtcagagggaagccagagaagtgagacacttccagtgttttgtggtt 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcaaatggacttagtcagagggaagccagagaagtgagacacttccagtgttttgtggtt 244
Query: 240 ggttagattgtgcttgcaaaaatgaacagaaatccagtcattc 282
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggttagattgtgcttgcaaaaatgaacagaaatccagtcattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 683
Length adjustment: 9
Effective length of query: 273
Effective length of database: 674
Effective search space: 184002
Effective search space used: 184002
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
