BAC Information

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BAC

Clone NameMSMg01-208M22
Chromosome5 (Build37)
Map Location 15,344,099 - 15,344,399
singlet/doubletsinglet
Overlap genenone
Upstream genePclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik, Speer7-ps1
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf, EG668131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208M22.T7 (MSMg01no208_m22.b1)MSMg01-208M22.TJ (MSMg01no208_m22.g1)
ACCAG391568AG391569
length764713
length of high quality
(start - end)		305 (46 - 350)62 (229 - 290)
definitionCHROMAT_FILE: MSMg01no208_m22.b1 PHD_FILE: MSMg01no208_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:44 2005CHROMAT_FILE: MSMg01no208_m22.g1 PHD_FILE: MSMg01no208_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGCGGTTTAGACACCGAGCTAAGATCCACCAGATGGCGCCAAA
ACTATAGCCTGCGCCTTAAGATGCGTCCAGAGACCAACCTTGGAAACCAC
TTCAACAGGTCAGTTCCTGTACCTATGAACAAGAAACAACCCTTGTTCTG
TGTAGTTGAATTTTTACAGCACATTTCTCAGATTCCTTCAGGGATTTTTC
GTGGTTATACTATTTCTCTTTGGTAATTTGTATTTTCTTCTTAGGAAATA
GGCATCTTTACGGTACAAGCCCATGGTCTCAAAATGGGGGGTGGGGGTGG
TTTTTTTTTTTTCCCCCCCCCCCCCCCCCNNNTTTTTTTTTTTTTTTNTT
TTTTNTTTTTGTCCCCCCCAAAAAAAAAAAAAANTNTTNTNGGTGGGGGG
GTTTTTTCCTCTTTTTTCCTCTCTTTTTCCTTTTCTCTCCCCCTTATTTT
GTTTTCCCCCTTAAATAATTTATAATTTATCACCTATTTCCTCTCCCTCC
CCCCCCATTTAAATCTANAAATATTTAACATCCANTAATAAACATAATCA
CAACACCTGCTCAACACATATACTCACCCTCTATAACATACTGTTTCCAC
CACCCATATACTATATTTTTTCTTTCCACTTTCACTACTTATCTTCCACT
TCTCCTATATCACTATTCTCACTCCTCTTCCCTTTTTCATCTACTCTCTT
TTTCCTTTCACTCT

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAAAAGATAAAAAGCAGCTAA
TTCAGCTTTTGGCACCTCAATGTAAATCCTTTCTAATTTTGGAGTTTTAA
GTGTATTCCAACTGAAAGCTGGTTGTCTGACTCATTACCCTTAAAGTCAG
CCAAATTTTTATTCGGAGAAAAGAAAGAACTCTTTACTCTTATTTATAAA
CTAATAACAAAGTTTTATTCACTTTATCTTTATAAGGGACATTCAAGATA
TATGAAAATAAGAAGTCAATATAAAAAATTAAAAGTTTGTCCCAACTGGG
AAGCAAGGATTTTTCTTAAAACCCCCCCCCCCTTAAGGTAAATAGGGTAC
TCTCTTTAGACATTCACTACGACATTTCAACAAAAGAAATATTTACAGGT
TAGGTAAAAGTAGCAATTAAAAAAAGGCAAAAAAGCTATTGGAAAGAAAA
TGTATAATCATATCACATATATGAAGTTTGGAAGAAAAAAAGCATTACAT
TTTGAGCAAGAAAAATCCAAGAGAAAAAGGGTTGAAAGGTATTTGACTGA
TTATAAAGTTTAAACCAGGATTAAGGCATAGAAATACTTAAAACATTCTG
GGAGGAAGGATTATCAAAGAAAAACAAAACAACAAACCTCACAAGAGGGA
CAAATAAGTACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_m22.b1 MSMg01no208_m22.b1 CHROMAT_FILE:
MSMg01no208_m22.b1 PHD_FILE: MSMg01no208_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:44 2005
         (305 letters)



>mm_chr5_15343895_15344599
          Length = 705

 Score =  574 bits (297), Expect = e-168
 Identities = 300/301 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttgcggtttagacaccgagctaagatccaccagatggcgccaaaactatagcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttgcggtttagacaccgagctaagatccaccagatggcgccaaaactatagcc 264

                                                                       
Query: 65  tgcgccttaagatgcgtccagagaccaaccttggaaaccacttcaacaggtcagttcctg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgcgccttaagatgcgtccagagaccaaccttggaaaccacttcaacaggtcagttcctg 324

                                                                       
Query: 125 tacctatgaacaagaaacaacccttgttctgtgtagttgaatttttacagcacatttctc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacctatgaacaagaaacaacccttgttctgtgtagttgaatttttacagcacatttctc 384

                                                                       
Query: 185 agattccttcagggatttttcgtggttatactatttctctttggtaatttgtattttctt 244
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 385 agattccttcagggatttttcgtggttatattatttctctttggtaatttgtattttctt 444

                                                                       
Query: 245 cttaggaaataggcatctttacggtacaagcccatggtctcaaaatggggggtgggggtg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttaggaaataggcatctttacggtacaagcccatggtctcaaaatggggggtgggggtg 504

            
Query: 305 g 305
           |
Sbjct: 505 g 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 705
Length adjustment: 9
Effective length of query: 296
Effective length of database: 696
Effective search space:   206016
Effective search space used:   206016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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