BAC Information

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BAC

Clone NameMSMg01-209K11
Chromosome5 (Build37)
Map Location 121,875,928 - 121,945,323
singlet/doubletdoublet
Overlap geneC330023M02Rik, Erp29, Tmem116
Upstream geneLhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1
Downstream geneAdam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209K11.T7 (MSMg01no209_k11.b1)MSMg01-209K11.TJ (MSMg01no209_k11.g1)
ACCAG392099AG392100
length719743
length of high quality
(start - end)
235 (124 - 358)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no209_k11.b1 PHD_FILE: MSMg01no209_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:51 2005CHROMAT_FILE: MSMg01no209_k11.g1 PHD_FILE: MSMg01no209_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,875,928 - 121,876,160)(121,945,044 - 121,945,323)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTCTTTTCATCCCAAGTCTGTATCTAAAATTTTTATGCATCCAA
ACTCATTCATGATTCATTGTCCGTTAGGAAATTCCGTGCTCTTAAAGCTG
AGTGGATAATGTGTTTTGATTCCAGGTGAGGAGACTGCGGTCTGGCAGGC
CCTGACTCTGCTGGAAGAAGGCTTAACCCACAGCCCATCCAATGCTCAGT
TCAAATTGCTACTTGTTCGGATCTACTGCGTGCTGGGTGCATTTGAACCA
GTGGTGGATCTCTACTCCAGTCTCGATGCTAAGCACATCCAGCACGACAC
CATTGGTTTGTTAGTATACACTCCGACTACCGAGCAGGCAGCTGCATGGA
GCCTAGGAAGGCACCCCCCTGGTAGCATACACTCTGAGAACCGAGCAGGC
AGTTTCGTCGAGCCTAGGAAGGTCACTCGTGTAGACTGTAGCAGCGCAGG
GCTCCAAACATTAGCCAGAGCGCAAGGGTTTGTATCTCCGACTGCTTTAA
TTATAATGGTCAGTTGCTTTCCCCAGAGATAGCGCCGGCCATTGTTTGAG
GCATGCTTGTGCTCTTTTGCTGTGTGTATCCTTCAGACTATCTTCTGTTG
AGCTATTGCCACTGACCCAAGACTTCATTTTGAGTTTGAGTTTGGGCCAT
GTTATGTAGTTATTCGAAN
TCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACCCAGAATTGCTACTGACCCTGAG
CCCACATTTCCTTTCAGCTCTCCAGTCTCGGGTTTGGCCAGAGGAGAGTC
CACTCATGTGAAACATTCACTCCCTGACATTCCCATTCTAGGGTCTCAAA
GAACGGTGGAGGAGCTGGAAGCAAGGGCAAGAGGAGACTCCAGTAGGTTT
GGGCTTCTACTATAAATTCTCTTCTGTGAGCACAGCAGTGGGGTCTGCGT
GTCTGCGTCACGGTGAGGCTCACGCTTTATCTGCTGGAACTTGCACTGTG
TCCAGTCTTATATGCCACCCCCGACCAGCCCCTGGGATGCTGCTGTGAGA
GCCTAGAGGAGATGGACAGCGGGAGCCCAACCTTCAGTCTTGTTAAGTCC
AGGAACAGGTAGGTCCCTTAGCCCTTATTTATAAAGCATGGTTACACATC
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCCTCCTCCCTCTCT
CCTCGCCCGTTTCGCCCCCTTTTTTTTTTTTTTGCCGTTCTTCCGTTTTC
TTGTGCCCTTTTTGCCCTTCGTGTTTCTTGCCTGCGGTTGTTGTTCCGGT
CCTTTGTTTTTTTTTTTATTATCCTTTATTCCTATTTGTTCCCCCTCGCC
GCGTTTTTTTCGCCTTTGTACATTTTTATTTTTTTCCCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_k11.b1 MSMg01no209_k11.b1 CHROMAT_FILE:
MSMg01no209_k11.b1 PHD_FILE: MSMg01no209_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:51 2005
         (235 letters)



>mm_chr5_121875728_121876362
          Length = 635

 Score =  451 bits (233), Expect = e-131
 Identities = 233/233 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaggaaattccgtgctcttaaagctgagtggataatgtgttttgattccaggtgaggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaggaaattccgtgctcttaaagctgagtggataatgtgttttgattccaggtgaggag 260

                                                                       
Query: 61  actgcggtctggcaggccctgactctgctggaagaaggcttaacccacagcccatccaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgcggtctggcaggccctgactctgctggaagaaggcttaacccacagcccatccaat 320

                                                                       
Query: 121 gctcagttcaaattgctacttgttcggatctactgcgtgctgggtgcatttgaaccagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcagttcaaattgctacttgttcggatctactgcgtgctgggtgcatttgaaccagtg 380

                                                                
Query: 181 gtggatctctactccagtctcgatgctaagcacatccagcacgacaccattgg 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtggatctctactccagtctcgatgctaagcacatccagcacgacaccattgg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no209_k11.g1 MSMg01no209_k11.g1 CHROMAT_FILE:
MSMg01no209_k11.g1 PHD_FILE: MSMg01no209_k11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:51 2005
         (282 letters)



>mm_chr5_121944844_121945525
          Length = 682

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccagaattgctactgaccctgagcccacatttcctttcagctctccagtctcgggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acccagaattgctactgaccctgagcccacatttcctttcagctctccagtctcgggttt 421

                                                                       
Query: 61  ggccagaggagagtccactcatgtgaaacattcactccctgacattcccattctagggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggccagaggagagtccactcatgtgaaacattcactccctgacattcccattctagggtc 361

                                                                       
Query: 121 tcaaagaacggtggaggagctggaagcaagggcaagaggagactccagtaggtttgggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcaaagaacggtggaggagctggaagcaagggcaagaggagactccagtaggtttgggct 301

                                                                       
Query: 181 tctactataaattctcttctgtgagcacagcagtggggtctgcgtgtctgcgtcacggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tctactataaattctcttctgtgagcacagcagtggggtctgcgtgtctgcgtcacggtg 241

                                                   
Query: 241 aggctcacgctttatctgctggaacttgcactgtgtccag 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aggctcacgctttatctgctggaacttgcactgtgtccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)