BAC Information

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BAC

Clone NameMSMg01-209K12
Chromosome5 (Build37)
Map Location 121,875,853 - 121,945,323
singlet/doubletdoublet
Overlap geneC330023M02Rik, Erp29, Tmem116
Upstream geneLhx5, Sdsl, Sds, 1300012G16Rik, Slc24a6, Tpcn1, Iqcd, 1110008J03Rik, Ddx54, LOC546886, Rasal1, Dtx1, Oas2, Oas3, Oas1e, Oas1c, Oas1b, Oas1f, Oas1h, Oas1g, Oas1a, Oas1d, Oas1i, Rph3a, LOC665299, Ptpn11, Rpl6, LOC100039686, EG545802, AU042671, Trafd1
Downstream geneAdam1b, Adam1a, Mapkapk5, Aldh2, 9330129D05Rik, Acad10, Brap, Atxn2, Sh2b3, A230106M15Rik, Cutl2, LOC100042693, Myl2, Ccdc63, Ppp1cc, Hvcn1, Tect1, Pptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209K12.T7 (MSMg01no209_k12.b1)MSMg01-209K12.TJ (MSMg01no209_k12.g1)
ACCAG392101AG392102
length708726
length of high quality
(start - end)
312 (45 - 356)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no209_k12.b1 PHD_FILE: MSMg01no209_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:51 2005CHROMAT_FILE: MSMg01no209_k12.g1 PHD_FILE: MSMg01no209_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,875,853 - 121,876,160)(121,945,044 - 121,945,323)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCTCTTTTGATCCCAAGTCTGTATCTAAAATTTTTATGCATCCAAA
CTCATTCATGATTCATTGTTGTTAGGAAATTCCGTGCTCTTAAAGCTGAG
TGGATAATGTGTTTTGATTCCAGGTGAGGAGACTGCGGTCTGGCAGGCCC
TGACTCTGCTGGAAGAAGGCTTAACCCACAGCCCATCCAATGCTCAGTTC
AAATTGCTACTTGTTCGGATCTACTGCGTGCTGGGTGCATTTGAACCAGT
GGTGGATCTCTACTCCAGTCTCGATGCTAAGCACATCCAGCACGACACCA
TTGGTTTGTTAGTATACACCCCCACCACCGAGCAGGCAGCTGCATGGAGC
CTAGGAAGGCATTGCCCTGGTAGAATACACTCTGAGAACCGAGCAGGCAG
TTTCGTCGAGCCTAGGAAGGTCACTCGTGTAGACTGTAGCAGCGCAGGGC
TCCATACATTAGCCAGAGCGCAAGGGTTTGTATCTCCGACTGCTTTAATT
ATAATGGTCAGTTGCTTTCCCCAGAGATAGTGCCGGCCATTGTTTGAGGC
ATGCTTGTGCTCTTTTGCTGTGTGTATCCTTCAGACTATCTTCTGTGAGC
TATTGCCACTGACCCAAGACTTCATTTTGAGTTTGAATTTGGCCTATGCT
ATGTAGCN
CCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCCAGAATTGCTACTGACCCTGA
GCCCACATTTCCTTTCAGCTCTCCAGTCTCGGGTTTGGCCAGAGGAGAGT
CCACTCATGTGAAACATTCACTCCCTGACATTCCCATTCTAGGGTCTCAA
AGAACGGTGGAGGAGCTGGAAGCAAGGGCAAGAGGAGACTCCAGTAGGTT
TGGGCTTCTACTATAAATTCTCTTCTGTGAGCACAGCAGTGGGGTCTGCG
TGTCTGCGTCACGGTGAGGCTCACGCTTTATCTGCTGGAACTTGCACTGT
GTCCAGTTTTTTTTGCCACACCCCCACCCGCCCCTGGGATGCTGCTGTGA
GAGCCTAGAGGAGATGGAGAGCGGGAGCCCAACCTTCAGTCTTGTTAAGT
CCAGGAACAGGTAGGTCCCTTAGCCCTTATTTATAAAGCATGGTTACACA
TCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCGCCTTTNCC
CCCTCCCTCTCTTTTTTTTTTTCTTCCCCCCCTTTTCTTTTCTTTTTTGT
TTTTTCCCTTTTTCTTTCCTTTTCTTTTTTTTCCCCCTCCCCCCTGTTTT
CCCTTGTCCTTTTGTCCTTTTCTCCTCTTTTCGCGCTTTCCCCCTTCTCC
CTTTTCCCCTTTTTTCTTTCTATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_k12.b1 MSMg01no209_k12.b1 CHROMAT_FILE:
MSMg01no209_k12.b1 PHD_FILE: MSMg01no209_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:51 2005
         (312 letters)



>mm_chr5_121875651_121876362
          Length = 712

 Score =  596 bits (308), Expect = e-175
 Identities = 308/308 (100%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattccctcttttgatcccaagtctgtatctaaaatttttatgcatccaaactcatt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattccctcttttgatcccaagtctgtatctaaaatttttatgcatccaaactcatt 262

                                                                       
Query: 63  catgattcattgttgttaggaaattccgtgctcttaaagctgagtggataatgtgttttg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 catgattcattgttgttaggaaattccgtgctcttaaagctgagtggataatgtgttttg 322

                                                                       
Query: 123 attccaggtgaggagactgcggtctggcaggccctgactctgctggaagaaggcttaacc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attccaggtgaggagactgcggtctggcaggccctgactctgctggaagaaggcttaacc 382

                                                                       
Query: 183 cacagcccatccaatgctcagttcaaattgctacttgttcggatctactgcgtgctgggt 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacagcccatccaatgctcagttcaaattgctacttgttcggatctactgcgtgctgggt 442

                                                                       
Query: 243 gcatttgaaccagtggtggatctctactccagtctcgatgctaagcacatccagcacgac 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gcatttgaaccagtggtggatctctactccagtctcgatgctaagcacatccagcacgac 502

                   
Query: 303 accattgg 310
           ||||||||
Sbjct: 503 accattgg 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no209_k12.g1 MSMg01no209_k12.g1 CHROMAT_FILE:
MSMg01no209_k12.g1 PHD_FILE: MSMg01no209_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:51 2005
         (283 letters)



>mm_chr5_121944844_121945526
          Length = 683

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccagaattgctactgaccctgagcccacatttcctttcagctctccagtctcgggttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acccagaattgctactgaccctgagcccacatttcctttcagctctccagtctcgggttt 421

                                                                       
Query: 61  ggccagaggagagtccactcatgtgaaacattcactccctgacattcccattctagggtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ggccagaggagagtccactcatgtgaaacattcactccctgacattcccattctagggtc 361

                                                                       
Query: 121 tcaaagaacggtggaggagctggaagcaagggcaagaggagactccagtaggtttgggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tcaaagaacggtggaggagctggaagcaagggcaagaggagactccagtaggtttgggct 301

                                                                       
Query: 181 tctactataaattctcttctgtgagcacagcagtggggtctgcgtgtctgcgtcacggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tctactataaattctcttctgtgagcacagcagtggggtctgcgtgtctgcgtcacggtg 241

                                                   
Query: 241 aggctcacgctttatctgctggaacttgcactgtgtccag 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 aggctcacgctttatctgctggaacttgcactgtgtccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)