BAC Information

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BAC

Clone NameMSMg01-212F03
Chromosome5 (Build37)
Map Location 52,832,000 - 52,832,284
singlet/doubletsinglet
Overlap genenone
Upstream genePpargc1a, Dhx15, Sod3, Gm447
Downstream geneLOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212F03.T7 (MSMg01no212_f03.b1)MSMg01-212F03.TJ (MSMg01no212_f03.g1)
ACCAG393724AG393725
length742738
length of high quality
(start - end)
---287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no212_f03.b1 PHD_FILE: MSMg01no212_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:03 2005CHROMAT_FILE: MSMg01no212_f03.g1 PHD_FILE: MSMg01no212_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTCCCCACAGTAACAAGATTGGA
ATCCTGCCTTAAAATACTCTGCATTTTGAGACTGACATTGTCTGCAGGAT
GGCAAAATGGTTCTGTTGCCACAGTGATTTCTTGAGAGTCAAGTCCCCAA
CAAGTAAATACCAGAGGTGAGTGGCTTAAAGCACTGAGCGGCCGTCTCCT
GAGGGAGGCATTGAGATTTCACAGGGGAAAGCATCATTACACACCACTTA
ACCCATCTGCCCTTCTCTCGTCTTTCCCCACAGTCAGCAGTCCCCATCAC
CGGGGCTTTGTTTTTTTATGGCACCCCCCCTGCATTTATGGCATTCATAC
CTGAGGACCCAAAGAGGCTCAGTGGAAAAGAAAATCTCAATTGTGTCAAG
ATATTCACTAAGTTAGCTTGTATAAAACACCCAAAGGGGACCCTAAAGGC
TAACCTTCAACTGGGAAAGCAGGAATTCAGGTTGCCTGCCCTTGAATGAT
CCAAAACAAACGGCATTTCTCTCCAAGGCATGGTCCAACTTACAGGAGAT
GAAAGGCAGTAGAAAACTCCGTCGTCAGGCTCTATGGAACCTGGGAGACA
CCAGACACGGAAGTCTTGATAAGCCACAGTGCCTCGGAGTTTGAGAAACA
GAGATCTACAGTTTGCCCTTTAGCACCGAGAGAGGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_f03.g1 MSMg01no212_f03.g1 CHROMAT_FILE:
MSMg01no212_f03.g1 PHD_FILE: MSMg01no212_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:03 2005
         (287 letters)



>mm_chr5_52831800_52832486
          Length = 687

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattccccacagtaacaagattggaatcctgccttaaaatactctgcattttgagactga 60
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 201 tattccccacagtaacaagattggaatcctgccttaaaacactctggattttgagactga 260

                                                                       
Query: 61  cattgtctgcaggatggcaaaatggttctgttgccacagtgatttcttgagagtcaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattgtctgcaggatggcaaaatggttctgttgccacagtgatttcttgagagtcaagtc 320

                                                                       
Query: 121 cccaacaagtaaataccagaggtgagtggcttaaagcactgagcggccgtctcctgaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaacaagtaaataccagaggtgagtggcttaaagcactgagcggccgtctcctgaggg 380

                                                                       
Query: 181 aggcattgagatttcacaggggaaagcatcattacacaccacttaacccatctgcccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcattgagatttcacaggggaaagcatcattacacaccacttaacccatctgcccttc 440

                                                        
Query: 241 tctcgtctttccccacagtcagcagtccccatcaccggggctttg 285
           ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tctcgtctttccccacagtcagcagtccccaacaccggggctttg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)