BAC Information

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BAC

Clone NameMSMg01-212F04
Chromosome5 (Build37)
Map Location 52,832,000 - 52,832,284
singlet/doubletsinglet
Overlap genenone
Upstream genePpargc1a, Dhx15, Sod3, Gm447
Downstream geneLOC100041805, Lgi2, LOC545750, D5Ertd135e, Pi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212F04.T7 (MSMg01no212_f04.b1)MSMg01-212F04.TJ (MSMg01no212_f04.g1)
ACCAG393726AG393727
length738742
length of high quality
(start - end)
319 (46 - 364)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no212_f04.b1 PHD_FILE: MSMg01no212_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:03 2005CHROMAT_FILE: MSMg01no212_f04.g1 PHD_FILE: MSMg01no212_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCTTGGGGACTAAACATCAACGCACTGGAGTCATGTCTTACTT
TTCCATGACCAAGGCATCCTATAGAAGAAAGACTTCTAGGGGTTTTACAG
TTCCAGAGGGTTAGAATTCACAATCCTCGTGGTAGGGAGCATGATGGCAG
GCAGGCAGGCAGGCAGGCAGGCAGGCAGACAGGCAGGCAGGCAGGCAGAC
AGGCAAGGCATAGGAGCAGTAGCCAAGAACTGATATCCTGACCCACAAGC
GTGAGGAACAGGGAGTGACTAGAGTCTTTCGAAACTCAAAGCCTACCCCC
AGTGACCATATTTTTTCTAATGCCCCCACACGTCCTAATCCTTCCAAAAT
AGTCTTACTAAGTGAAGTATTCAAATGTCACCTATGAGGAGCGACAGTCT
CATTCCAACCACCCCTTTTACTTTCTGGTCCCCACAGACTCTTGGCAATA
TCATAATACAAAATAGTCAAACTTCAAGACTCTCCATAGTCTTTTACTGT
GTCAACACTGTTTAAAAGACTCAAGGTAACTGTAACACCCCCCCCCCCGT
AAAATCTGCATAGCTCTAACATACAGTGACCTAGTATGCATTACCATTCC
AAACAAGGAAGAAAGGAGGGGTTGTTAGGAAATATGGGACCTAAGGAGAA
CCCAACCCAGTAGGGCCCACTGAATCCTGTAACTCCAG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTCCCCACAGTAACAAGATTGGA
ATCCTGCCTTAAAATACTCTGGATTTTGAGACTGACATTGTCTGCAGGAT
GGCAAAATGGTTCTGTTGCCACAGTGATTTCTTGAGAGTCAAGTCCCCAA
CAAGTAAATACCAGAGGTGAGTGGCTTAAAGCACTGAGCGGCCGTCTCCT
GAGGGAGGCATTGAGATTTCACAGGGGAAAGCATCATTACACACCACTTA
ACCCATCTGCCCTTCTCTCGTCTTTCCCCACAGTCAGCAGTCCCCATCAC
CGGGGCTTTGTTTGTGTATGCCCCCCCACTGCATTTATGGCATTCATACC
TGAGGACCCAAAGAGGTTCAGTGGGAAAGAAAATCTCAATTGTGTCAAGA
TATTCACTAAGTTAGCTTGTATAAAACACCCAAAGGGGACCCTAAAGGCT
AACCTTCAACTGGGAAAGCAGGAATTCAGGTTGCCTGCCCTTGAATGATC
CAAAACAAACGGCATTTCTCTCCAAGGCATGGTCCAACTTACAGGAGATG
AAAGGCAGTAGAAAACTCCGTCGTCAGGCTCTATGGAACCTGCGATACAC
CAGACACGGAAGTCTTGATAAGCCCCAGTGTCTCGGAGTTTGAGAAGTAG
AGATCTACAGTTTGCTCCTTATCACACAACAAAGGTGACAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_f04.g1 MSMg01no212_f04.g1 CHROMAT_FILE:
MSMg01no212_f04.g1 PHD_FILE: MSMg01no212_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:03 2005
         (289 letters)



>mm_chr5_52831800_52832488
          Length = 689

 Score =  536 bits (277), Expect = e-157
 Identities = 283/285 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattccccacagtaacaagattggaatcctgccttaaaatactctggattttgagactga 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tattccccacagtaacaagattggaatcctgccttaaaacactctggattttgagactga 260

                                                                       
Query: 61  cattgtctgcaggatggcaaaatggttctgttgccacagtgatttcttgagagtcaagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattgtctgcaggatggcaaaatggttctgttgccacagtgatttcttgagagtcaagtc 320

                                                                       
Query: 121 cccaacaagtaaataccagaggtgagtggcttaaagcactgagcggccgtctcctgaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccaacaagtaaataccagaggtgagtggcttaaagcactgagcggccgtctcctgaggg 380

                                                                       
Query: 181 aggcattgagatttcacaggggaaagcatcattacacaccacttaacccatctgcccttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcattgagatttcacaggggaaagcatcattacacaccacttaacccatctgcccttc 440

                                                        
Query: 241 tctcgtctttccccacagtcagcagtccccatcaccggggctttg 285
           ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tctcgtctttccccacagtcagcagtccccaacaccggggctttg 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)