BAC Information

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BAC

Clone NameMSMg01-212F09
Chromosome5 (Build37)
Map Location 149,536,525 - 149,536,757
singlet/doubletsinglet
Overlap genenone
Upstream geneFlt1, LOC100039825, Pomp, Slc46a3, C130038G02Rik, LOC100041819, Slc7a1, LOC100041842, Ubl3
Downstream gene2210417A02Rik, LOC100041869, Katnal1, 8430423G03Rik, 1810059H22Rik, LOC667386, LOC100039964, Hmgb1, EG667410, LOC100040006, Uspl1, 2310047D07Rik, Alox5ap, 6330406I15Rik, 4930588N13Rik, LOC100040037, LOC100040062, 4930434E21Rik, Hsp110, EG433968, B3galtl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212F09.T7 (MSMg01no212_f09.b1)MSMg01-212F09.TJ (MSMg01no212_f09.g1)
ACCAG393734AG393735
length733759
length of high quality
(start - end)
---227 (128 - 354)
definitionCHROMAT_FILE: MSMg01no212_f09.b1 PHD_FILE: MSMg01no212_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:04 2005CHROMAT_FILE: MSMg01no212_f09.g1 PHD_FILE: MSMg01no212_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATTTTTCTCACCTACGGGATAGCTTACAATCACCTAGATT
CAGGTCTATACGATTTGTTTTCCTCTTCAGACCTCCTTATGCAAGGATAC
TTGTCTGTCTCTATGCACTTGCAGAGGCCAGAGGACAACCTCAGAAATCC
CCTTTGGAGAGATAGCTCACATTGGACTGAAGCTCAATGATCAGACTAAA
TAGCTGACCGATAAGCTCTAAAGATCCTCTAGGCTCCCTCTAGCTAAACC
TGGAATTACTAGTATGCATGTCTACAGCTCTGACAATAGACCTCCTTGAA
CCTAGATAGATGGTATTACTCGCATATATTTTGTAACAACCTTGGTTATT
GCTAAGTGACCAACCCCCCCGCTTACTACCCTTTCCCTTCATCTCATTAC
CGGCGGGCGACTTGTCACGGATGATTGCTGCCGAGAGATCTGGCTGGCTT
CATGATCCCACGTGTAGGATGCTCTGGACTTGCCGAGTGCCCTTATTTCT
CTCCTGTCGCCCAAAAGCTGCGAGTTGGAGAGAATAACCCTCGCTTAATG
GATTTATGAAACATTTACCCTGCCCAGATTGTTTTTCTGTTTTTTAACGC
ACTGTAGTAAGGCTTGATAGTTTCTCTCAGTATTCCTGCTTTGAGTGTAT
TATAGTAAATTTTAATATTTGATTCACGCTGTT
NCCTCAATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCTCCCTGGGGCAACCAGA
CCTTGGGGGCCAGTCTTTAGCATTCCCAATACCTACCAACAGAACAAAAC
TCAACACCCCTCTCCCTCTCTTGGTTATAAGTTTGCTCTGTCAAGTGAAA
ATACAGTCTTGTATTATTTCTTCTAAGGGTTAAAAGAAAACTTAATTGTC
TTTTCCAAAGATTCATCTTTACATAAAAATCTGCACACAATCCCCGTATT
TCACGGTCACACACACAAAACCTATTCCAGAATATAGGGGTTGTTTGATT
TTTGTTTGTTTTATTGNTTTTCCCNATTCGAACCCCAAAAATTTTATCTG
CTGTAAAATGTTTCTGTTTTTCCCCCCCCCAAAAAGAAATAAACATTTCC
CCGAGTCACTGTGTTTCAATAATTTTTATTTTGATGTCCATTTCATAATC
TTCCACTCGCGGATTTGTTTAATATGTACTGGTGTTTATAGTCGAGTTAT
GACAGACGTCTCAAGGTATCCTATTCATACTTATATTTCTATATGTATTT
TTATTATTATTATTAACCATTATGCATGTAATCATTATGTGTGACGATTT
CTGTATTCTCCTGTATACGTATTTATTTTTCTTTACTCCCATATTTTATT
TATTGCTTATACATACAAGCACTTCTAATACTACTAAGCTATTTCACCAA
ACGACAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_f09.g1 MSMg01no212_f09.g1 CHROMAT_FILE:
MSMg01no212_f09.g1 PHD_FILE: MSMg01no212_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:04 2005
         (227 letters)



>mm_chr5_149536325_149536957
          Length = 633

 Score =  358 bits (185), Expect = e-103
 Identities = 219/233 (93%), Gaps = 6/233 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatacctaccaacagaacaaaactcaacacccctctc----cctctcttggttataagtt 56
           |||||||| ||||||||||||||||||||||||||||    |||||||||||||||||||
Sbjct: 201 aatacctagcaacagaacaaaactcaacacccctctctctccctctcttggttataagtt 260

                                                                       
Query: 57  tgctctgtcaagtgaaaatacagtcttgtattatttcttctaagggttaaaagaaaactt 116
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctctgtcaagtgaaaatacagtcttgtattatttcttctaagggttaaaagaaaactt 320

                                                                       
Query: 117 aattgtcttttccaaagattcatctttacataaaaatctgcacacaatccccgtatttca 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 aattgtcttttccaaagattcatctttacataaaaatctgcacacaatccctgtatttca 380

                                                                
Query: 177 cggtc--acacacacaaaacctattccagaatataggggttgtttgatttttg 227
           | |||  |||||||||||||| | ||||| || ||||||||| ||||||||||
Sbjct: 381 ccgtctcacacacacaaaaccgactccaggatctaggggttgcttgatttttg 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 633
Length adjustment: 9
Effective length of query: 218
Effective length of database: 624
Effective search space:   136032
Effective search space used:   136032
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)