BAC Information

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BAC

Clone NameMSMg01-213L10
Chromosome5 (Build37)
Map Location 4,185,172 - 4,185,446
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik, Ankib1, Krit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51
Downstream geneENSMUSG00000053178, LOC100041073, Fzd1, LOC667678, Pftk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213L10.T7 (MSMg01no213_l10.b1)MSMg01-213L10.TJ (MSMg01no213_l10.g1)
ACCAG394616AG394617
length725718
length of high quality
(start - end)
277 (43 - 319)284 (70 - 353)
definitionCHROMAT_FILE: MSMg01no213_l10.b1 PHD_FILE: MSMg01no213_l10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:49 2005CHROMAT_FILE: MSMg01no213_l10.g1 PHD_FILE: MSMg01no213_l10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:49 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTTCCCCGAGTCTTTCCTGATCTTTGTGCATCTACTGTTTCTGAACTG
CTGACATTTTCAGAACAGTTCCTATGACGAGTTTTTAAAAGAACAACTTT
TTTACTGCCAGAAGATTATTTTATTTCACATGGTACATACGAAAGTTCTG
TTTTCCTAAATTCAAAATCTCTGGTCCTATGACTAATGAATTCTTCAGAA
ACCATATGCCATCAGATGGGTGTCACAGTCATGTCCTGAAGAGATTTCTT
TGCCTTATCTAGATGTTCTAATACAAATGGTCACAGGAGAGGAGCAGGAC
CAGGGTCGGGATACTCTCCCANTCCAGNGGCCCCATGAAGGTCTGAGGAC
CCAGGGCTGGCTACACCCCACCACAAAAAAAAATCAATCCTAGTCACTTT
GAGCTAGCAGAATTTTGTCCCATGGTGTGGTCTCTGCTTCAGGCAGAAAT
GGAGCAAAACAATTTTTGATATCAACTCTAATTTCCTTTCTTCCAATTCT
AATTTCCCTTCCCACTCAAAAATTTATTTGTTACAATATATTCTTGAGAG
CTGTCACTGGACAACAGCAAAGATATAGAGAATAAATAAGCCATCATATG
TATTAGCTCAGACCTCTGCCCTACAACTCAGAACAGCTGGGTTCCTTCAT
GTCTCACGAGAAAAGCATTTTTTTN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTGAGACTGTTTGAATCTTGAAGAAATGT
TGTCTCTCTAGAGAATCTGCTACTGGCACCATGTGAGAGCTTCAGCTACA
CCAACCTTGGTCCTAAGACACTTCTAACAAACCTGGAGCTCTTATTTTAG
ATTATGGCTGGCCATGGCCAAAAGGGACTGAGATCTGTGTGAGTTGTTTG
CCTTGACAGGCAGCAAGGGCAAGATGGCATTGGTACTTAGAACCTTTCCC
AGCCCCAATTAACTTTGTATAATGTTTGAAAGTAACTGGAGTGAGATACC
TGGTTTTTTTTTTTCCCCCCCCCCGCCGAACCTCTCTGATCTTCCAGGAA
ATGAAGGATTACCCCCCCGCAAAAATACCCTCTCTACTGCCGTTACTACG
ACTAATACCTACCACTAGATAATCTCCCTATCCCCAAGATCACGGAGAGA
TTCATAAGTATGTGAAACTCTGAGACTTTATCCTAGACCTCTGACCCCTC
TTTCCATTTGATTTCCCAAGCCACAAAATGAAGATCTGTCTTTTATACAA
ACTGTTGATGGTCCCAAGTCTATCATACATGACCCAGTTAATCACAATTT
GGCCCTGTATGCTAGACTCTCTCGTATCTTCAATTTCCACAAACTATGCG
CAGTGCCTATATTACTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_l10.b1 MSMg01no213_l10.b1 CHROMAT_FILE:
MSMg01no213_l10.b1 PHD_FILE: MSMg01no213_l10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:49 2005
         (277 letters)



>mm_chr5_4184968_4185646
          Length = 679

 Score =  451 bits (233), Expect = e-131
 Identities = 264/275 (96%), Gaps = 2/275 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttccccgagtctttcctgatctttgtgcatctactgtttctgaactgctgaca 64
           |||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattctttccctgagtctttcctggtctttgtgcatctactgtttctgaactgcttaca 264

                                                                       
Query: 65  ttttcagaacagttcctatgacgagtttttaaaagaacaactttttt--actgccagaag 122
           ||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||
Sbjct: 265 ttttcagaacagttcctatgacgagttttaaaaagaacaacttttttttactgccagaag 324

                                                                       
Query: 123 attattttatttcacatggtacatacgaaagttctgttttcctaaattcaaaatctctgg 182
           ||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||
Sbjct: 325 attattttatttcacatggtaaatatgaaagttctgttttcctaaattaaaaatctctgg 384

                                                                       
Query: 183 tcctatgactaatgaattcttcagaaaccatatgccatcagatgggtgtcacagtcatgt 242
           ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccaatgactgatgaattcttcagaaaccatatgccatcagatgggtgtcacagtcatgt 444

                                              
Query: 243 cctgaagagatttctttgccttatctagatgttct 277
           |||||||||||||||||||||||||||||||||||
Sbjct: 445 cctgaagagatttctttgccttatctagatgttct 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 679
Length adjustment: 9
Effective length of query: 268
Effective length of database: 670
Effective search space:   179560
Effective search space used:   179560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)