Query= MSMg01no213_m01.b1 MSMg01no213_m01.b1 CHROMAT_FILE:
MSMg01no213_m01.b1 PHD_FILE: MSMg01no213_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:52 2005
(330 letters)
>mm_chr5_24962800_24963525
Length = 726
Score = 530 bits (274), Expect = e-155
Identities = 305/326 (93%), Gaps = 18/326 (5%)
Strand = Plus / Plus
Query: 5 gaattctatgggactagagagatagctcagtgattaaagaacagctgctgcccttctaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 gaattctatgggactagagagatagctcagtgattaaagaacagctgctgcccttctaga 278
Query: 65 caatccaagttcagttcccagcacccacgtagggcagttcacaacaactgtctgtatgta 124
|||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 279 caatccaagttcagttcccagcacccac--------------aacaactgtctgtatgta 324
Query: 125 agtctagctcaaggacttacaacaccttctggcttccactagcatgtctgtaacatatga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agtctagctcaaggacttacaacaccttctggcttccactagcatgtctgtaacatatga 384
Query: 185 acatacatacatggaacaagtaagtaagtcttgggggtgggaattccatatgaaaaagga 244
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acatacatacatggaacaaataagtaagtcttgggggtgggaattccatatgaaaaagga 444
Query: 245 cataaataagtggatatatatattttaagtcgtggaatattgtaactctagaaattttat 304
||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 445 cataagtaagtggatatat----tttaagttgtggaatattgtaactctagaaattttat 500
Query: 305 gacataaacctaaattaattttctta 330
||||||||||||||||||||||||||
Sbjct: 501 gacataaacctaaattaattttctta 526
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 726
Length adjustment: 9
Effective length of query: 321
Effective length of database: 717
Effective search space: 230157
Effective search space used: 230157
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no213_m01.g1 MSMg01no213_m01.g1 CHROMAT_FILE:
MSMg01no213_m01.g1 PHD_FILE: MSMg01no213_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:52 2005
(283 letters)
>mm_chr5_25026283_25026963
Length = 681
Score = 520 bits (269), Expect = e-152
Identities = 279/283 (98%), Gaps = 2/283 (0%)
Strand = Plus / Minus
Query: 1 tggctttcacaagcccttggcctatatgccaagagtgcttagcatgtgaggccaggcaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggctttcacaagcccttggcctatatgccaagagtgcttagcatgtgaggccaggcaaa 422
Query: 61 agatgctgaaaaggagacctgaaaaggagagactcttgggaaggatcctcgtagatactg 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 421 agatgctgaaaaggagacctgaaaaggagagactcttgggaaggatcctcttagatactg 362
Query: 121 ggcaagcctctacctcctcttccatgttaaagtgtgctgttttcccctcntcccactcca 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 361 ggcaagcctctacctcctcttccatgttaaagtgtgctgttttcccctc--cccacccca 304
Query: 181 ctcccacctggaatgcatgttttccttcaggactgcaaggatcttgtggaggaagggttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ctcccacctggaatgcatgttttccttcaggactgcaaggatcttgtggaggaagggttt 244
Query: 241 ggagacaacacattccactacctaaatgggccgctgtccccac 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ggagacaacacattccactacctaaatgggccgctgtccccac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 681
Length adjustment: 9
Effective length of query: 274
Effective length of database: 672
Effective search space: 184128
Effective search space used: 184128
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
