BAC Information

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BAC

Clone NameMSMg01-213M14
Chromosome5 (Build37)
Map Location 85,025,688 - 85,025,978
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039608, LOC231368, Epha5, LOC100039489
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213M14.T7 (MSMg01no213_m14.b1)MSMg01-213M14.TJ (MSMg01no213_m14.g1)
ACCAG394667AG394668
length746748
length of high quality
(start - end)
316 (34 - 349)295 (61 - 355)
definitionCHROMAT_FILE: MSMg01no213_m14.b1 PHD_FILE: MSMg01no213_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:55 2005CHROMAT_FILE: MSMg01no213_m14.g1 PHD_FILE: MSMg01no213_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTC
AGTTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACC
TTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAGG
ATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTCTTTGTATTATTGA
CGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTG
TCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATTT
GTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATAT
TTTTCTTTGTCTCCGCCCCCCACGCGAAGTTCTTTGATCCATTTAGATTT
GACCTCACCCCCCCCGAGATAAATATGGATCGATTCGCATTCTTCTACAT
GATAACAACCAGTTGTGTTCACACCATTTGTTGAACATGCTGTCTTTCTT
CCACTGGATGGTTTTCGCTCCCTTGTCGAAGATCCAGTGACCATAGGTGT
GTGGGTTTATTTCTGGGTCTTCTATTCTATTCCCTTGGTCTTCTTGTCTG
TTTCTATACCAGTATCTTGCAGTTTTTTACCTTATTTGCTCTGTATTAAA
GCTTTAGGTCAGGCTATGGTGATTTCCACATAAATTCTCTTTTTATCCTT
GAATATAGTTCTTTGCCATCCCTAGGCTTATTTGTTCTTTCTCCAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXATTAGTTATGAATTACATTTTTTACAAATTGCTAAAATAT
TAAAGTAACCTCTATTGAATAAGCACTTATACGCTAAGGCTGGGAATGTT
TGTATGGTTGTATGTTGATTGGTGTACACTCATTATCTCACTTAATTGTT
ATAAAAATTCACACTAATGCATAAAACTATAAAATAAGTTTTACTCTTAT
TTTCTTCAAAGTTATCAATAATTTAATCTGTGACTTCCTTTTGAAATCCG
AAAGAATTCAATTGAATATTTATACTAATGTGTAAGTCTTTCCATCTTAT
TATTTTTTTTCTAACACCTCCACCATCTGATCAAATGATTTTTTTTTCCC
TGTAGCCCCCCCCCTGACAATTATATAAGAATTTTCTTCCAGTCATGTTC
TGCAATTGACGCTGTGCCCTTACTGTTTCTTAATTTAATTCCACATTTGC
TAAAGAATTGCTTTACTTATTTGCTGGCTAAAAATAAGAGTTTTGTGCTT
AATCTCCAGTCATTTCTCTGTAAGTTTTAATCTACATTCAACTTGAGGTT
GTCTATCACTGTAACACGAAAAGTATTACAGTTGAAGCCTGAAATATGTT
CTATATCTGATCTTTTCCACCACTTCTTTGTATACCTATCATTTGATCCC
TCTTTCCATATTATAATTTCTTAACCTCGATTATCTTCAAACTCGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_m14.g1 MSMg01no213_m14.g1 CHROMAT_FILE:
MSMg01no213_m14.g1 PHD_FILE: MSMg01no213_m14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:55 2005
         (295 letters)



>mm_chr5_85025488_85026181
          Length = 694

 Score =  511 bits (264), Expect = e-149
 Identities = 285/292 (97%), Gaps = 1/292 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attagttatgaattacattttttacaaattgctaaaatattaaagtaacctctattgaat 60
           ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 attagttatgaattaca-tatttacaaattgctaaaatattaaagtaacctctattgaat 433

                                                                       
Query: 61  aagcacttatacgctaaggctgggaatgtttgtatggttgtatgttgattggtgtacact 120
           ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 432 aagcacttatacgttaaggctgagaatgtttgtatggttgtatgttgattggtgtacact 373

                                                                       
Query: 121 cattatctcacttaattgttataaaaattcacactaatgcataaaactataaaataagtt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 372 cattatctcacttaattgttataaaaattcacactaatgcataaaactgtaaaataagtt 313

                                                                       
Query: 181 ttactcttattttcttcaaagttatcaataatttaatctgtgacttccttttgaaatccg 240
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 312 ttactcttattttcttcaaagttatcaataatttaatttgtgacttccttttgaaatctg 253

                                                               
Query: 241 aaagaattcaattgaatatttatactaatgtgtaagtctttccatcttatta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaagaattcaattgaatatttatactaatgtgtaagtctttccatcttatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 694
Length adjustment: 9
Effective length of query: 286
Effective length of database: 685
Effective search space:   195910
Effective search space used:   195910
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)